Skip navigation

DSpace

機構典藏 DSpace 系統致力於保存各式數位資料(如:文字、圖片、PDF)並使其易於取用。

點此認識 DSpace
DSpace logo
English
中文
  • 瀏覽論文
    • 校院系所
    • 出版年
    • 作者
    • 標題
    • 關鍵字
  • 搜尋 TDR
  • 授權 Q&A
    • 我的頁面
    • 接受 E-mail 通知
    • 編輯個人資料
  1. NTU Theses and Dissertations Repository
  2. 理學院
  3. 化學系
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/37744
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor方俊民(Jim-Min Fang)
dc.contributor.authorYu-Fang Hsuen
dc.contributor.author許瑜芳zh_TW
dc.date.accessioned2021-06-13T15:41:34Z-
dc.date.available2013-07-18
dc.date.copyright2008-07-09
dc.date.issued2008
dc.date.submitted2008-07-07
dc.identifier.citation1.van Heijenoort, J. Nat. Prod. Rep. 2001, 18, 503–519. Recent advances in the formation of the bacterial peptidoglycan monomer unit.
2.Lazar, K.; Walker, S. Curr. Opin. Chem. Biol. 2002, 6, 786–793. Substrate analogues to study cell-wall biosynthesis and its inhibition.
3.Sauvage, E.; Kerff, F.; Terrak, M.; Ayala, J. A.; Charlier, P. FEMS Microbiol. Rev. 2008, 32, 234–258. The penicillin-binding proteins: structure and role in peptidoglycan biosynthesis.
4.Lovering, A. L.; de Castro, L. H.; Lim, D.; Strynadka N. C. J. Science 2007, 315, 1402–1405. Structural insight into the transglycosylation step of bacterial cell-wall biosynthesis.
5.Auger, G.; Crouvoiser, M.; Caroff, M.; van Heijenoort, J.; Blanot, D. Lett. Peptide Sci. 1997, 4, 371–376. Synthesis of an analogue of the lipoglycopeptide membrane intermediate I of peptidoglycan biosynthesis.
6.Men, H.; Park, P.; Ge, M.; Walker, S. J. Am. Chem. Soc. 1998, 120, 2484–2485. Substrate synthesis and activity assay for MurG.
7.Ye, X.-Y.; Lo, M-C.; Brunner, L; Walker, D; Kahne, D; Walker, S. J. Am. Chem. Soc. 2001, 123, 3155–3156. Better substrates for bacterial transglycosylases.
8.VanNieuwenhze, M. S.; Mauldin, S. C.; Zia-Ebrahimi, M.; Aikins, J. A.; Blaszczak, L. C. J. Am. Chem. Soc. 2001, 123, 6983–6988. The total synthesis of Lipid I.
9.Takatsuki, A.; Tamura, G. J Antibiot. 1971, 24, 232–238. Tunicamycin, a new antibiotic. III. Reversal of the antiviral activity of tunicamycin by aminosugars and their derivatives.
10.Isono, K.; Uramoto, M.; Kusakabe, H.; Kimura, K.; Izaki, K.; Nelson, C.; McCloskey, J. A. J. Antibiot. 1985, 38, 1617–1621. Liposidomycins: novel nucleoside antibiotics which inhibit bacterial peptidoglycan synthesis.
11.Corre, L. L.; Gravier-Pelletier, C.; Merrer, Y. L. Eur. J. Org. Chem. 2007, 5386–5384. Towards new MraY inhibitors: A serine template for uracil and 5-amino-5-deoxyribosyl scaffolding.
12.Cavalleri, B.; Pagnn, H.; Volpe, G. ; Selva, E ; Parenti, F. J. Antibiot. 1984, 37, 309–317. A-16686, A new antibiotic from Actinoplanes I. Fermentation, isolation and preliminary physico-chemical characteristics.
13.Johnson, C. C.; Taylor, S.; Pitsakis, P.; May, P.; Levison, M. E. Antimicrob. Agents Chemother. 1992, 36, 2342–2345. Bactericidal activity of Ramoplanin against antibiotic-resistant Enterococci.
14.Ha, S.; Chang, E.; Lo, M.-C.; Men, H.; Park, P.; Ge, M.; Walker, S. J. Am. Chem. Soc. 1999, 121, 8415–8426. The Kinetic characterization of Escherichia coli MurG using synthetic substrate analogues.
15.Schwartz, B.; Markwalder, J. A.; Wang, Y. J. Am. Chem. Soc. 2001, 123, 11638–11643. Lipid II: Total synthesis of the bacterial cell wall precursor and utilization as a substrate for glycosyltransfer and transpeptidation by penicillin binding protein (PBP) 1b of Escherichia coli.
16.VanNieuwenhze, M. S.; Mauldin, S. C.; Zia-Ebrahimi, M.; Winger, B. E.; Hornback; W. J.; Saha, S. L.; Aikins, J. A.; Blaszczak, L. C. J. Am. Chem. Soc. 2002, 124, 3656–3660. The first total synthesis of Lipid II: The final monomeric intermediate in bacterial cell wall biosynthesis.
17.Saha, S. L.; VanNieuwenhze, M. S.; Hornback, W. J.; Aikins, J. A.; Blaszczak, L. C. Org. Lett. 2001, 3, 3575–3577. Synthesis of an orthogonally protected precursor to the glycan repeating unit of the bacterial cell wall.
18.Walsh, C. T. Science 1993, 261, 308–309. Vancomycin resistance: decoding the molecular logic.
19.Walsh, C. T.; Fisher, S.L.; Park, I-S.; Prahalnd, M.; Wu, Z. Chem. Biol. 1996, 3, 21–28. Bacterial resistance to vancomycin: five genes and one missing hydrogen bond tell the story.
20.Ostash, B.; Walker, S. Curr. Opin. Chem. Biol. 2005, 9, 459–466. Bacterial transglycosylase inhibitors.
21.Hsu, S.-T. D.; Breukink, E.; Tishchenko, E.; Lutters, M. A. G.; de Kruijff, B. D.; Kaptein, R.; Bonvin, A. M. J. J.; van Nuland, N. A. J. Nat. Struct. Mol. Biol. 2004, 11, 963–967. The Nisin-Lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics.
22.Welzel, P.; Kunisch, F.; Kruggel, F.; Stein, H.; Scherkenbeck, J.; Hiltmann, A. Tetrahedron. 1987, 43, 589–598. Moenomycin A: minimum structural requirements for biological activity.
23.Sofia M. J.; Allanson, N.; Hatzenbuhler, N. T.; Jain, R.; Kakarla, R.; Kogan, N.; Liang, R.; Liu, D.; Silva, D. J.; Wang, H.; Gange, D.; Anderson, J.; Chen, A.; Chi, F.; Dulina, R.; Huang, B.; Kamau, M.; Wang, C.; Baizman, E.; Branstrom, A.; Bristol, N.; Goldman, R.; Han, K.; Longley, C.; Midha, S.; Axelrod, H. R. J. Med. Chem. 1999, 42, 3193–3198. Discovery of novel disaccharide antibacterial agents using a combinatorial library approach.
24.Clercq, E. D. Nature Rev. 2006, 5, 1015–1025. Antiviral agents active against influenza A viruses.
25.Guo, C-T.; Sun, X-L.; Kanie, O.; Shortridge, K. F.; Suzuki, T.; Miyamoto, D.; Hidari, K. I.-P. J.; Wong, C-H.; Suzuki, Y. Glycobiology. 2002, 12, 183–190. A glycoside of sialic acid derivative that inhibits both hemagglutinin and sialidase activities of influenza viruses.
26.Kok, G. B.; Norton, A. K.; von Itzstein, M. Synthesis 1997, 1185–1188. Synthesis of C-4 halogen-substituted dertvatives of Neu5Ac2en and KDN2en.
27.Lioux, T.; Busson, R.; Rozenski, J.; Nguyen-Disteche, M.; Frere, J. M.; Herdewijn, P. Collect. Czech. Chem. Commun. 2005, 70, 1615–1641. Synthesis of peptidoglycan units with UDP at the anomeric postion.
28.Vesely, J.; Ledvina, M.; Jindrich, J.; Saman, D.; Trnka, T. Collect. Czech. Chem. Commun. 2003, 68, 1264–1274. Improved synthesis of 1,2-trans-acetates and 1,2-trans ethyl 1-thioglycosides derived from 3,4,6-tri-O-acetyl-2-deoxy-2- phthalimido-D-hexopyranosides.
29.Sarkar, S. K.; Roy, N. J. Carbohydr. Chem. 2003, 22, 285–296. Synthesis of the blocked pentasaccharide derivative related to the repeating unit of the O-antigen from shigella dysenteriae type 3 in the form of its allyl glycoside.
30.Eid, C. N.; Nesler, M. J.; Zia-Ebrahimi, M.; Wu, C.-Y. E.; Yao, R.; Cox, K.; Richardson, J. J. Labelled Compd. Radiopharm. 1998, 41, 705–716. Synthesis of a radioiodinated Park nucleotide analog: a new tool for antibacterial screen development.
31.Hu, T.; Panek, J. S. J. Am. Chem. Soc. 2002, 124, 11368–11378. Enantioselective synthesis of the protein phosphate inhibitor (–)-Motuporin.
32.Gervay, J.; Ramamoorthy, P. S. Mamuya, N. N. Tetrahedron 1997, 53, 11039–11048. Ring opening of sialyllactones with glycine esters: synthesis of selectively protected glycinyl-NeuAc saccharopeptides.
33.Kok, G. B.; Groves, D. R.; von Itzstein, M. Chem. Commun. 1996, 2017–2018. A facile and direct entry to functionalised Neu5Ac2en derivatives from the methyl ketoside of Neu5Ac methyl esters.
34.Chandler, M.; Bamford, M. J.; Conroy, R.; Lamont, B.; Patel, B.; Patel, V. K.; Steeples, I. P.; Storer, R.; Weir, N. G.; Wright, M.; Williamson, C. J. Chem. Soc. Perkin Trans. 1 1995, 1173–1180. Synthesis of the potent influenza neuraminidase inhibitor 4-guanidino Neu5Ac2en. X-Ray molecular structure of 5-acetamido-4-amino-2,6-anhydro-3,4,5-trideoxy-D-erythro-L-gluco-nononic acid.
35.von Itzstein, M.; Wu, W. Y.; Jin, B. Carbohydr. Res. 1994, 259, 301–305. The synthesis of 2,3-didehydro-2,4-dideoxy-4-guanidinyl-N-acetylneuraminic acid: a potent influenza virus sialidase inhibitor.
36.Ryu, Y.; Scott, A. I. Tetrahedron Lett. 2003, 44, 7499–7502. Self-condensation of activated malonic acid half esters: a model for the decarboxylative Claisen condensation in polyketide biosynthesis.
37.Bhaskar K., V.; Duggan, P. J.; Humphrey, D. G.; Krippner, G. Y.; McCarl, V.; Offermann, D. A. J. Chem. Soc. Perkin Trans. 1 2001, 1098–1102. Phenylboronic acid as a labile protective agent: the selective derivatisation of 1,2,3-triols.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/37744-
dc.description.abstract過去數十年中,抗生素在治療細菌感染的疾病上扮演著重要的角色。然而相繼產生的抗藥性問題,不但在治療用藥上出現危機,也對人類的健康造成極大的威脅,因此發展新穎的抗生素便成為刻不容緩的課題。細菌的細胞壁可保護細胞避免因外界的高滲透壓而脹破,對於細菌之生存是必要的,而其細胞壁主要是由肽聚醣所構成。因此我們欲以抑制肽聚醣生合成中重要的酵素-轉醣酶之活性,作為開發新型抗生素之研究目標。
首先,我們合成出轉醣酶之天然受質-Lipid II,並將其提供於轉醣酶活性檢測系統之建立。
再者,我們以一個特殊的醣為核心骨架,模擬Lipid II進行轉醣化過程時的過渡態,作為設計轉醣酶抑制劑之概念。
我們根據molecular docking的結果,成功地合成出一些具有潛力成為轉醣酶抑制劑之化合物,並將其進行轉醣酶活性與最低抑菌濃度之檢測。篩檢結果,這些化合物,對轉醣酶並無達到預期的抑制效果且無抑菌性,我們期待在未來開發有效的轉醣酶抑制劑,並成為新一代有潛力之抗生素。
zh_TW
dc.description.abstractThe use of antibiotics has dominated therapies for bacterial infections over the past decades. Nevertheless, the emergence of antimicrobial resistance has become a serious problem and has created a major threat to public health. It is obvious that development of new antibiotics is in an urgent need. The cell wall is essential for bacterial life because of its tolerance towards the high internal osmotic pressures. An essential constituent of bacterial cell wall is the peptidoglycan. Our approach to develop new antibiotics is to inhibit transglycosylase (TG), a specific enzyme, in peptidoglycan biosynthesis pathway.
In the first place, we demonstrated the synthesis of Lipid II, the natural substrate of transglycosylase, and applied to establish transglycosylase activity assay.
In the second place, we chose a specific saccharide as the core structure to mimic the transition-state of the polymerization of Lipid II during transglycosylation.
Several compounds were developed as possible transglycosylase inhibitors on the basis of the molecular docking model and screened for the transglycosylase activity assay and MIC assay. Through these compounds did not show the desired TG inhibition of antibacterial activity, discovery of an efficient inhibitor of transglycosylase may promise the development of potent antibiotics in the future.
en
dc.description.provenanceMade available in DSpace on 2021-06-13T15:41:34Z (GMT). No. of bitstreams: 1
ntu-97-R95223021-1.pdf: 6719080 bytes, checksum: fb0f61efd18b4d681200701b9a62122b (MD5)
Previous issue date: 2008
en
dc.description.tableofcontents謝誌 I
英文摘要 III
中文摘要 V
目錄 VII
表目錄 X
圖目錄 XI
流程目錄 XII
簡稱用語對照表 XIII
第一章 緒論 ………………………………………………………… 1
1.1 抗生素的介紹與抗藥性 ……………………………………… 1
1.2 細菌細胞壁之生合成…………………………………………… 2
1.3 青黴素結合蛋白………………………………………………… 4
1.4 Lipid I的合成及其抑制劑………………………………………5
1.4.1 Lipid I之合成……………………………………………5
1.4.2 MraY以及MurG之抑制劑………………………………… 6
1.5 Lipid II的合成及其抑制劑…………………………………… 8
1.5.1 Lipid II之合成………………………………………… 8
1.5.2 轉醣酶與轉胜肽酶之抑制劑……………………………10
1.6 模擬過渡態所設計之抑制劑……………………………………11
第二章 結果與討論 …………………………………………………15
2.1 Lipid II之合成…………………………………………………15
2.2 轉醣酶抑制劑之設計概念…………………………………… 27
2.3 合成轉醣酶抑制劑………………………………………………29
2.3.1 轉醣酶抑制劑JMF 2074之合成…………………………29
2.3.2 轉醣酶抑制劑JMF 2123之合成…………………………33
2.3.3 轉醣酶抑制劑JMF 2173之合成…………………………36
2.4 轉醣酶活性檢測…………………………………………………38
2.5 最低抑菌濃度之檢測……………………………………………41
2.6 結論………………………………………………………………42
第三章 實驗部分 ……………………………………………………45
3.1 General Part……………………………………………………45
3.2 General Procedure for MIC assay………………………… 46
3.3 Synthetic Procedures and Spectral Data…………………47
第四章 參考文獻 ……………………………………………………91
附錄光譜 …………………………………………………………… 97
dc.language.isozh-TW
dc.title細菌轉醣化之研究:設計及合成轉醣酶之受質與抑制劑zh_TW
dc.titleDesign and Synthesis of the Substrate and Inhibitors for Study of Bacterial Transglycosylationen
dc.typeThesis
dc.date.schoolyear96-2
dc.description.degree碩士
dc.contributor.oralexamcommittee蔡蘊明(Yeun-Min Tsai),鄭偉杰(Wei-Chieh Cheng)
dc.subject.keyword轉醣&#37238,&#32957,聚糖,zh_TW
dc.subject.keywordtransglycosylase,peptidoglycan,Lipid II,en
dc.relation.page96
dc.rights.note有償授權
dc.date.accepted2008-07-07
dc.contributor.author-college理學院zh_TW
dc.contributor.author-dept化學研究所zh_TW
顯示於系所單位:化學系

文件中的檔案:
檔案 大小格式 
ntu-97-1.pdf
  目前未授權公開取用
6.56 MBAdobe PDF
顯示文件簡單紀錄


系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。

社群連結
聯絡資訊
10617臺北市大安區羅斯福路四段1號
No.1 Sec.4, Roosevelt Rd., Taipei, Taiwan, R.O.C. 106
Tel: (02)33662353
Email: ntuetds@ntu.edu.tw
意見箱
相關連結
館藏目錄
國內圖書館整合查詢 MetaCat
臺大學術典藏 NTU Scholars
臺大圖書館數位典藏館
本站聲明
© NTU Library All Rights Reserved