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  3. 化學系
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/29148
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor陳逸聰
dc.contributor.authorPei-Ling Chiangen
dc.contributor.author江佩玲zh_TW
dc.date.accessioned2021-06-13T00:43:00Z-
dc.date.available2008-07-27
dc.date.copyright2007-07-27
dc.date.issued2007
dc.date.submitted2007-07-23
dc.identifier.citation(1) Syvanen, M.; Kado, C. I. Horizontal gene transfer; Academic Press, 2002.
(2) Ochia, K.; Yamanaka, T.; Kimura, K.; Sawada, O. [Inheritance of drug resistance
(and its transfer) between Shigella strains and between Shigella and E. coli strains]
Nihon Iji Shimpo 1959, 1861.
(3) Akiba, T.; Koyama, K.; Ishiki, Y.; Kimura, S.; Fukushima, T. [On the mechanism
of the development of multiple-drug-resistant clones of Shigella] Jpn J Microbiol.
1960, 4.
(4) Went, F. W. [Parallel evolution] Taxon 1971, 20.
(5) Struhl, K.; Cameron, J. R.; Davis, R. W. [Functional genetic expression of
eukaryotic DNA in Escherichia coli] Proc. Natl. Acad. Sci. USA 1976, 73.
(6) Davis, J.; Jimenez, A. [A new selective agent for eukaryotic cloning vectors] Am. J.
Tropical Med. Hygiene 1980, 29.
(7) Palmiter, R. D.; Norstedt, G.; Gelinas, R. E. [Metallothionein-human GH fusion
genes stumulate growth of mice] Science 1983, 222.
(8) Eisenbrandt, R.; Kalkum, M.; Lai, E. M.; Lurz, R.; Kado, C. I.; Lanka, E.
[Conjugative pili of IncP plasmids, and the Ti plasmid T pilus are composed of cyclic
subunits] J. Biol. Chem. 1999, 274, 22548-22555.
(9) Harrington, L. C.; Rogerson, A. C. [The F Pilus of Escherichia coli Appears To
Support Stable DNATransfer in the Absence of Wall-to-Wall Contact between Cells] J.
Bacteriol. 1990, 172, 2.
(10) Lawley, T. D.; Gordon, G. S.; Wright, A.; Taylor, D. E. [Bacterial conjugative
transfer: visualization of successful mating pairs and plasmid establishment in live
Escherichia coli ] Mol. Microbiol. 2002, 44, 10.
(11) Stroun, M.; Anker, P.; Auderset, G. [Natural release of nucleic acids from bacteria
into plant cells] Nature 1970, 227.
(12) Gelvin, S. B. [Gene exchange by design] Nature 2005, 433, 2.
(13) Kerr, A. [Transfer of virulence between isolates of Agrobacterium] Nature 1969,
223.
(14) Nester, E. W.; Kosuge, T. [Plasmids specifying plant hyperplasias] Annu. Rev.
Microbiol. 1981, 35.
(15) Lai, E. M.; Kado, C. I. [Processed VirB2 is the major subunit of the promiscuous
pilus of Agrobacterium tumefaciens] J. Bacteriol. 1998, 180, 2711-2717.
(16) Christie, P. J.; Atmakuri, K.; Krishnamoorthy, V.; Jakubowski, S.; Cascales, E.
[Biogenesis, architecture, and function of bacterial type IV secretion systems] Ann.
Rev. Microbiol. 2005, 59, 451-485.
63
(17) Ream, W. [Agrobacterium tumefaciens and interkingdom genetic exchange] Ann.
Rev. Phytopathol. 1989, 27, 36.
(18) Griffiths, A. J. F.; Gelbart, W. M.; Miller, J. H.; Lewontin, R. C. Modern Genetic
Analysis New York, 1999.
(19) Sze, S. M. physics of semiconductor devices; 3 ed.; Wiley, 2007.
(20) Cui, Y.; Duan, X. F.; Hu, J. T.; Lieber, C. M. [Doping and electrical transport in
silicon nanowires] J. Phys. Chem. B 2000, 104, 5213-5216.
(21) Hahm, J.; Lieber, C. M. [Direct ultrasensitive electrical detection of DNA and
DNA sequence variations using nanowire nanosensors] Nano Lett. 2004, 4, 51-54.
(22) Zheng, G. F.; Patolsky, F.; Cui, Y.; Wang, W. U.; Lieber, C. M. [Multiplexed
electrical detection of cancer markers with nanowire sensor arrays] Nat. Biotechnol.
2005, 23, 1294-1301.
(23) Patolsky, F.; Zheng, G. F.; Hayden, O.; Lakadamyali, M.; Zhuang, X. W.; Lieber,
C. M. [Electrical detection of single viruses] Proc. Natl. Acad. Sci. U. S. A. 2004, 101,
14017-14022.
(24) Patolsky, F.; Timko, B. P.; Yu, G. H.; Fang, Y.; Greytak, A. B.; Zheng, G. F.;
Lieber, C. M. [Detection, stimulation, and inhibition of neuronal signals with highdensity
nanowire transistor arrays] Science 2006, 313, 1100-1104.
(25) Avouris, P. [Molecular electronics with carbon nanotubes] Acc. Chem. Res. 2002,
35, 1026-1034.
(26) Cui, Y.; Lauhon, L. J.; Gudiksen, M. S.; Wang, J. F.; Lieber, C. M. [Diametercontrolled
synthesis of single-crystal silicon nanowires] Appl. Phys. Lett. 2001, 78,
2214-2216.
(27) Gooding, J. J. [Nanoscale biosensors: Significant advantages over larger devices?]
Small 2006, 2, 313-315.
(28) Nair, P. R.; Alam, M. A. [Performance limits of nanobiosensors] Appl. Phys. Lett.
2006, 88, 3.
(29) Sheehan, P. E.; Whitman, L. J. [Detection limits for nanoscale biosensors] Nano
Lett. 2005, 5, 803-807.
(30) Ma, D.; Lee, C. S.; Au, F. C. K.; Tong, S. Y.; Lee, S. T. [Small-diameter silicon
nanowire surfaces] Science 2003, 299, 1874-1877.
(31) Delley, B.; Steigmeier, E. F. [SIZE DEPENDENCE OF BAND-GAPS IN
SILICON NANOSTRUCTURES] Appl. Phys. Lett. 1995, 67, 2370-2372.
(32) Patolsky, F.; Zheng, G. F.; Lieber, C. M. [Fabrication of silicon nanowire devices
for ultrasensitive, label-free, real-time detection of biological and chemical species]
Nat. Protocols 2006, 1, 14.
(33) Zhang, F. X.; Srinivasan, M. P. [Self-assembled molecular films of aminosilanes
and their immobilization capacities] Langmuir 2004, 20, 2309-2314.
64
(34) Blitz, J. P.; Murthy, R. S.; Leyden, D. E. [Ammonia-Catalyzed Silylation
Reactions of Cab-0-Si1 with Methoxymethylsilanes] J. Am. Chem. SOC 1987, 109, 5.
(35) Jin, L.; Horgan, A.; Levicky, R. [Preparation of end-tethered DNA monolayers on
siliceous surfaces using heterobifunctional cross-linkers] Langmuir 2003, 19, 6968-
6975.
(36) Xiao, S. J.; Brunner, S.; Wieland, M. [Reactions of surface amines with
heterobifunctional cross-linkers bearing both succinimidyl ester and maleimide for
grafting biomolecules] J.Phys. Chem. B 2004, 108, 16508-16517.
(37) Shirasu, K.; Kado, C. I. [Membrane location of the Ti plasmid VirB proteins
involved in the biosynthesis of a pilin-like conjugative structure o Agrobacterium
tumefaciens] FEMS Microbiol. Lett. 1993, 111.
(38) Lai, E. M.; Kado, C. I. [The T-pilus of Agrobacterium tumefaciens] Trends
Microbiol. 2000, 8, 361-369.
(39) Lai, E. M.; Kado, C. I. [Processed VirB2 is the major subunit of the promiscuous
pilus of Agrobacterium tumefaciens] J. Bacteriol. 1998, 180, 2711-2717.
(40) Martel, R.; Schmidt, T.; Shea, H. R.; Hertel, T.; Avouris, P. [Single- and multiwall
carbon nanotube field-effect transistors] App. Phys. Lett. 1998, 73, 2447-2449.
(41) Sze, S. M. physics of semiconductor devices; 3 ed.; Wiley, 2007.
(42) Avouris, P. [Molecular electronics with carbon nanotubes] Acc. Chem. Res. 2002,
35, 1026-1034.
(43) Javey, A.; Guo, J.; Wang, Q.; Lundstrom, M.; Dai, H. J. [Ballistic carbon
nanotube field-effect transistors] Nature 2003, 424, 654-657.
(44) Durkop, T.; Kim, B. M.; Fuhrer, M. S. [Properties and applications of highmobility
semiconducting nanotubes] J. Phys.:Condens Matter 2004, 16, R553-R580.
(45) Cui, Y.; Duan, X. F.; Hu, J. T.; Lieber, C. M. [Doping and electrical transport in
silicon nanowires] J. Phys. Chem. B 2000, 104, 5213-5216.
(46) Appenzeller, J.; Knoch, J.; Derycke, V.; Martel, R.; Wind, S.; Avouris, P. [Fieldmodulated
carrier transport in carbon nanotube transistors] Phys. Reb. Lett. 2002, 89,
4.
(47) Durkop, T.; Getty, S. A.; Cobas, E.; Fuhrer, M. S. [Extraordinary mobility in
semiconducting carbon nanotubes] Nano Lett. 2004, 4, 35-39.
(48) Rosenblatt, S.; Yaish, Y.; Park, J.; Gore, J.; Sazonova, V.; McEuen, P. L. [High
performance electrolyte gated carbon nanotube transistors] Nano Lett. 2002, 2, 869-
872.
(49) Vijayaraghavan, A.; Kar, S.; Soldano, C.; Talapatra, S.; Nalamasu, O.; Ajayan, P.
M. [Charge-injection-induced dynamic screening and origin of hysteresis in fieldmodulated
transport in single-wall carbon nanotubes] App. Phys. Lett. 2006, 89, 3.
65
(50) Kim, W.; Javey, A.; Vermesh, O.; Wang, O.; Li, Y. M.; Dai, H. J. [Hysteresis
caused by water molecules in carbon nanotube field-effect transistors] Nano Lett.
2003, 3, 193-198.
(51) Wunnicke, O. [Gate capacitance of back-gated nanowire field-effect transistors]
App. Phys. Lett. 2006, 89, 3.
(52) Ilani, S.; Donev, L. A. K.; Kindermann, M.; McEuen, P. L. [Measurement of the
quantum capacitance of interacting electrons in carbon nanotubes] Nat. Phys. 2006, 2,
687-691.
(53) Cui, Y.; Zhong, Z. H.; Wang, D. L.; Wang, W. U.; Lieber, C. M. [High
performance silicon nanowire field effect transistors] Nano Lett. 2003, 3, 149-152.
(54) Bradley, K.; Briman, M.; Star, A.; Gruner, G. [Charge transfer from adsorbed
proteins] Nano Lett. 2004, 4, 253-256.
(55) Artyukhin, A. B.; Stadermann, M.; Friddle, R. W.; Stroeve, P.; Bakajin, O.; Noy,
A. [Controlled electrostatic gating of carbon nanotube FET devices] Nano Lett. 2006,
6, 2080-2085.
(56) Chen, R. J.; Bangsaruntip, S.; Drouvalakis, K. A.; Kam, N. W. S.; Shim, M.; Li,
Y. M.; Kim, W.; Utz, P. J.; Dai, H. J. [Noncovalent functionalization of carbon
nanotubes for highly specific electronic biosensors] Proc. Natl. Acad. Sci. USA 2003,
100, 4984-4989.
(57) Larrimore, L.; Nad, S.; Zhou, X. J.; Abruna, H.; McEuen, P. L. [Probing
electrostatic potentials in solution with carbon nanotube transistors] Nano Lett. 2006,
6, 1329-1333.
(58) Gruner, G. [Carbon nanotube transistors for biosensing applications] Analyt.
Bioanalyt. Chem 2006, 384, 322-335.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/29148-
dc.description.abstract隨著奈米元件之蓬勃發展,奈米線/奈米管場效應電晶體對生物領域的研究,漸漸觸及各類系統,小至DNA 大至神經細胞活動的偵測。因為元件尺度的縮減,使得電子或電洞被侷限於較小的空間活動,除了載子之移動速率增加外,元件表面的電位(potential)變化對元件內之電流影響也比傳統之MOSFET大,靈敏度的增加很顯著,在沒有外力驅動待測物的條件下,光靠擴散,偵測力可達10-12 M。
線毛 (pili),在細菌的接合生殖(conjugative gene transfer)與平行基因移轉(horizontal gene transfer)中扮演了極為重要的角色。線毛類似生物的奈米管,由一顆一顆的蛋白質所組裝成,直徑約為十奈米,長度可達數微米,內部有兩奈米的空腔。傳統上只能大量表現後,以穿遂式電子顯微鏡或電泳等方式來證明它的存在。對於細菌間的接合生殖,一直以來存在著兩種說法,一種是線毛扮演著繩索的角色,拉近兩隻細菌,而後細胞壁穿孔,質體(plasmid)由孔洞中經過;另一種說法,線毛扮演著輸送管的角色,兩隻細菌不必有直接的細胞壁接觸,光靠線毛內部的空腔,就足以輸送質體到另一隻細菌上。而對於後者的猜測,目前都只有間接證據。
本研究之最終目的將以矽奈米線場效應電晶體來研究細菌間的接合生殖之相關主題,但在這長程計劃的第一步,我們得先了解線毛與矽奈米線場效應電晶體之結合及其相應的訊號。在此篇論文,我們以農桿菌(Agrobacterium tumefaciens)的T-pili (T 線毛)為研究主體,在矽奈米線上修飾T-線毛抗體,有別於傳統,本研究以電學的方式,利用矽奈米線場效應電晶體的高靈敏度,測到了低於文獻一百萬倍(106)以上的濃度(10-12 M),為下一步細菌接合生殖的研究,揭開了一個新的序幕。
zh_TW
dc.description.abstractTremendous progress has been made in the development of nanowire/nanotube field effect transistors (FET) as biosensors in a variety of studies ranging from DNA,
proteins, to neuronal signal propagation. With the reduction of device dimensions, the charge carriers are confined to move in a finite space, thus enhancing the carrier mobility that exceeds the limits of conventional MOSFET. Moreover, the carrier density can be altered by a small change of surface potential, resulting in the high
sensitivity of NW/NT FET to a picomolarity level. Since the discovery of horizontal gene transfer in Agrobacterium tumefaciens in 1981, various investigations have been conducted to elaborate the mechanism of gene transfer. Although pilus which processes a 2 nm lumen in the center was found indispensable in the transfer process, there remain two debates. One argues that pili alone could transfer plasmids and served as conduit. The other states that cell contact is necessary for the plasmid transfer. Here, we apply silicon nanowire field-effect transistors (SiNW-FET), for the first time, as a sensitive tool to detect the T-pili in vitro with a very high sensitivity to a picomolarity level, thus offering a new opportunity to investigate the mechanism of gene transfer.
en
dc.description.provenanceMade available in DSpace on 2021-06-13T00:43:00Z (GMT). No. of bitstreams: 1
ntu-96-R94223025-1.pdf: 7458190 bytes, checksum: 4cd37061763f2cf8f04e00cf424d0b4c (MD5)
Previous issue date: 2007
en
dc.description.tableofcontents目 錄
口試委員會審定書………………………………………………………………......i
謝誌…………………………………………………………………………………..ii
中文摘要…………………………………………………………………………….iii
英文摘要……………………………………………………………………………..iv
目錄……………………………………………………………………….…………..v
圖目錄……………………………………………………………………………....vii
第一章、 序論…………………………………………………………………….....1
1.1 細菌之基因移轉…………………………………………………..…………3
1.1.1 細菌之接合生殖與線毛………………………………………………..3
1.1.2 Agrobacterium tumefaciens………………………………………….......5
1.1.3 實驗目的與手法…………………………………………………….......7
1.2 場效應電晶體…………………………………………………………..…...8
1.2.1 MOSFETs……………………………………………………….…….....8
1.2.2 矽奈米線場效應電晶體………………………………………………..9
第二章、實驗方法…………………………………………………………………13
2.1 場效應電晶體晶片製作……………………………………………….......14
2.1.1 硼參雜矽奈米線的合成………………………………………………14
2.1.2 微電極加工……………………………………………………………15
(I) 外層與內層電極之黃光蝕刻…………………………………………15
(II) 電極之熱蒸鍍………………………………………………………...17
(III) SiNW-FET 陣列結構……………………………………………........18
2.2 儀器裝置簡介…………………………………………………………........20
2.3 實驗方法……………………………………………………………………23
vi
2.3.1 電性量測( I-V & I-Vg)…………………………………………….......23
2.3.2 微流通道………………………………………………………………24
2.3.3 表面修飾………………………………………………………………25
2.3.4 流體實驗………………………………………………………………29
2.4 生物樣品的準備……………………………………………………….......32
第三章、實驗結果與討論…………………………………………………………36
3.1 元件分析…………………………………………………………………...36
3.1.1 傳導特性, I-Vg 圖………………….………………………………….36
3.1.2 I-V 圖………………………………………………………………..45
3.2 修飾證明…………………………………………………………………...47
3.3 辨識結果…………………………………………………………………...50
3.4 機制討論…………………………………………………………………...56
3.4.1 capacitive gating……………..…………………………………………56
3.4.2 partial electron transfer……….………………………………………...58
3.4.3 其他…………………….……………………………………………...59
第四章、結論………………………………………………………………………61
參考文獻……………………………………………………………………………62
dc.language.isozh-TW
dc.subject場效應電晶體zh_TW
dc.subject米線zh_TW
dc.subject矽奈zh_TW
dc.subject細菌zh_TW
dc.subject線毛zh_TW
dc.subjectAgrobacterium tumefaciensen
dc.subjectSilicon Nanowireen
dc.subjectField-Effect Transistoren
dc.subjectPilien
dc.title矽奈米線場效應電晶體在細菌線毛上的偵測zh_TW
dc.titleIn-vitro Electrical Detection of Bacterial Pili with
Silicon Nanowire Field-Effect Transistor
en
dc.typeThesis
dc.date.schoolyear95-2
dc.description.degree碩士
dc.contributor.oralexamcommittee黃良平,蘇志明,賴爾?
dc.subject.keyword矽奈,米線,場效應電晶體,細菌,線毛,zh_TW
dc.subject.keywordPili,Silicon Nanowire,Field-Effect Transistor,Agrobacterium tumefaciens,en
dc.relation.page65
dc.rights.note有償授權
dc.date.accepted2007-07-25
dc.contributor.author-college理學院zh_TW
dc.contributor.author-dept化學研究所zh_TW
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