請用此 Handle URI 來引用此文件:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/28899
完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 戴昌鳳(Chang-Feng Dai) | |
dc.contributor.author | Tsai-Ming Lu | en |
dc.contributor.author | 呂在明 | zh_TW |
dc.date.accessioned | 2021-06-13T00:28:33Z | - |
dc.date.available | 2010-07-27 | |
dc.date.copyright | 2007-07-27 | |
dc.date.issued | 2007 | |
dc.date.submitted | 2007-07-24 | |
dc.identifier.citation | Avise JC, Walker D (1999) Species realities and numbers in sexual vertebrates: Perspectives from an asexually transmitted genome. Proc Natl Acad Sci USA 96: 992-995
Berrill NJ (1950) The Tunicata. The Bay Society, London Berrill NJ (1955) The Origin of Vertebrates. Oxford University Press, London Berrill NJ (1975) Chordata: Tunicata. In: Giese AC and Pearse JS, eds, Reproduction of marine invertebrates II. p. 241-282, Academic Press. New York, USA Blair JE, Hedges SB (2005) Molecular phylogeny and divergence times of deuterostome animals. Mol Biol Evol 22: 2275-2284 Brown WM, George MJ, Wilson AC (1979) Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA 76: 1967-1971 Chen YT, Dai CF (1998) Sexual reproduction of the ascidian Polycarpa cryptocarpa kroboja from the Northern Coast of Taiwan. Acta Oceanogr Taiwanica 37: 201-210 Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1660 Coffroth MA, Lasker HR, Diamond ME, Bruenn JA, Bermingham E (1992) DNA fingerprinting of a gorgonian coral: a method for detecting clonal structure in a vegetative species. Mar Biol 114: 317-325 Corbo JC, Gregorio AD, Levine M (2001) The ascidians as a model organism in development and evolutionary biology. Cell 106: 535-538 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B et al. (2002) The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298: 2157-2167 Delsuc F, Brinkmann H, Chourrout D, Philippe H (2006) Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439: 965-968 Folmer O, Black M, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotech 3: 294-299 Hebert PDN, Cywinska A, Ball SL, DeWaard JR (2003) Biological identification through DNA barcodes. Proc R Soc Lond B 270: 313-321 Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Asad Sci USA 101: 14812-14817 Hebert PDN, Ratnasingham S, DeWaard JR (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B 270: S596-S599 Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004) Identification of birds through DNA barcodes. PLoS Biol 2: e312 Hillis DM, Dixon MT (1991) Ribosomal DNA: Molecular evolution and phylogenetic inference. Q Rev Biol 66: 411-453 Holland LZ (1992) The phylogenetic significance of tunicate sperm morphology. In: 6th International Congress on Spermatology. Raven Press, Raven Press Siena Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755 Johns GC, Avise JC (1998) A comparative summary of genetic distance in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol 15: 1481-1490 Keane TM, Naughton TJ, Travers SAA, McInerney JO, McCormack GP (2005) DPRml: Distributed Phylogeny Reconstruction by Maximum Likelihood. Bioinformatics 21:969-974 Kessel RG (1983) Oogenesis, Oviposition, and Oosorption. In: Adiyodi KG and Adiyodi RG (eds), Reproductive biology of invertebrates. Volume I, p. 655-734. John Wiley & Sons Ltd., New York. . Knowlton N (1993) Sibling species in the sea. Annu Rev Ecol Syst 24: 189-216 Knowlton N, Weigt LA (1998) New dates and new rates for divergence across the Isthmus of Panama. Proc R Soc Lond B 265: 2257-2263 Kott P (1985) The Australian ascidiacea part 1, Phlebobranchia and Stolidobranchia. Mem Queensland Mus 23: 1-440 Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150-163 Lahille F (1890) Recherches sur les Tuniciers des côtes des France. Faculté des Sciences de Paris, 1-330 Lee T, Foighil DÓ (2004) Hidden Floridian biodiversity: mitochondrial and nuclear gene trees reveal four cryptic species within the scorched mussel, Brachidontes exustus, species complex. Mol Ecol 13: 3527-3542 Monniot F, Monniot C (2001) Ascidians from the tropical western Pacific. Zoosystema 23: 201-353 Moore WS (1995) Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear gene trees. Evolution 49: 718-726 Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University Pfenninger M, Nowak C, Kley C, Steinke D, Streit B (2007) Utility of DNA taxonomy and barcoding for the inference of larval community structure in morphological cryptic Chironomus (Diptera) species. Mol Ecol 16: 1957-1968 Plough HH (1978) Sea squirts of the continental shelf from Maine to Texas. John Hopkins University Press, Baltimore, Maryland, USA Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818 Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497 Satoh N (1994) Development Biology of Ascidians. Cambridge University Press, Cambridge, U. K. Seifert KA, Samaon RA, DeWaard JR, Houbraken J, Lévesque CA, et al (2007) Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case. Proc Natl Acad Sci USA 104: 3901-3906 Stach T, Turbeville JM (2002) Phylogeny of tunicata inferred from molecular and morphological characters. Mol Phyl Evol 25: 408-428 Svane I, Havenhand JT (1993) Spawning and dispersal in Ciona intestinalis (L.) PSZNI Mar Ecol 14: 53-66 Svane I, Young CM (1989) The ecology and behavior of ascidian larvae. Oceanogr mar Biol A Rev 27: 45-90 Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Sinauer Associates, Massachusetts, USA Tarjuelo I, Posada D, Crandall KA, Pascual M, Turon X (2001) Cryptic species of Clavelina (Acsidiacea) in two different habitates: harbours and rocky littoral zones in the northwestern Mediterranean. Mar Biol 139: 455-462 Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl Aci Res 22: 4673-4680 Turon X and López-Legentil S (2004) Ascidian molecular phylogeny inferred from mtDNA data with emphasis on the Aplousobranchiata. Mol Phyl Evol 33: 309-320 Van Name WG (1945) The north and south American ascidians. Bull Am Mus Nat Hist 84: 1-476 Vazquez E, Ramos-Espla AA, Turon X (1995) The genus Polycarpa (Ascidiacea, Styelidae) on the Atlantic and Mediterranean coasts of the Iberian Peninsula. J Zool Lond 237: 593-614 Witt JDS, Threloff DL, Hebert PDN (2006) DNA barcoding reveals extraordinary cryptic diversity in an amphipod genus: implications for desert spring conservation. Mol Ecol 15: 3073-3082 Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: The primary kingdoms. Proc Natl Acad Sci USA 74: 5088-5090 Xia X, Xie Z (2001) DAMBE: Data analysis in molecular biology and evolution. J Hered 92: 371-373 Zeng L, Jacobs MW, Swalla BJ (2006) Coloniality has evolved once in Stolidobranch Ascidians. Integr Comp Biol 46: 255-268 | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/28899 | - |
dc.description.abstract | 多囊海鞘(genus Polycarpa)為個體型海鞘,大多生長於熱帶及亞熱帶的淺水域珊瑚礁或岩石上,是珊瑚礁生物群聚的重要成員。牠們的革質外鞘可以提供其他動物附生,例如:雙殼貝、多毛蟲、以及其他種海鞘等都是常見附生動物。多囊海鞘屬,全世界已知紀錄約有四十餘種,但過去在台灣的研究中只有一種之紀錄。本研究目標是了解台灣產多囊海鞘的物種多樣性及其分子親緣關係。於2005至2006年之間,在台灣沿岸海域一共採集了102隻個體經比對形態特徵,鑑定出五種多囊海鞘,其中四種為新紀錄種。在親緣關係方面,本研究選擇兩段去氧核糖核酸,粒線體細胞色素C氧化酶(COI)及核糖體轉錄區間(ITS),做為分子標誌經由聚合酶連鎖反應(polymerase chain reaction)增幅,並經DNA定序之後,分別以鄰聚法(Neighbor-joining)、最大儉約法(Maximum-parsimony)、最大似然率(Maximum-likelihood)、及貝氏法(Bayesian method)來建構親緣關係樹,所得到的樹形大致相似,也符合形態的分群。結果也顯示,不同種多囊海鞘中的孵育型生殖模式,可能是各自獨立演化的結果,同時,在皺裂多囊海鞘中(Polycarpa rima)可能有隱蔽種(cryptic species)的存在。 | zh_TW |
dc.description.abstract | The species of Polycarpa (Stolidobranchia: Styelidae) are solitary ascidians that generally occur on the surface of coral reefs or rocks in tropical and subtropical shallow waters. They are important members in marine sessile communities because their leathery tunic provides habitats for other organisms, such as bivalves, polychaetes, echinoderms and other ascidians. There are about 40 species of Polycarpa worldwide, but only one species is previously recorded in Taiwan. The objectives of this study are to explore Polycarpa species diversity in Taiwan and to infer their molecular phylogeny. In total, 102 individuals of 5 Polycarpa species were collected from northern and southern Taiwan in 2005 and 2006. Among them, 4 Polycarpa species are newly recorded in Taiwan. Partial mitochondrial cytochrome C oxidase subunit I (COI) and the nuclear ribosomal internal transcribed spacer (ITS) DNA sequences were amplified and sequenced. These sequences were applied to phylogenetic reconstruction using neighbor joining, maximum parsimony, maximum likelihood, and Bayesian methods. The topologies of phylogenetic trees reconstructed by four methods are similar. Based on the phylogeny of Polycarpa, there are two major findings: (1) brooding mode of reproduction in the Polycarpa species have evolved independently; (2) there may be a cryptic species within the Polycarpa rima complex. | en |
dc.description.provenance | Made available in DSpace on 2021-06-13T00:28:33Z (GMT). No. of bitstreams: 1 ntu-96-R94241204-1.pdf: 2657334 bytes, checksum: 0f4e88c2b0dc477f7c49c37c67a7e853 (MD5) Previous issue date: 2007 | en |
dc.description.tableofcontents | Table of Content
摘要 I Abstract II Table of Content III Table Content V Figure Legends VI 1. Introduction 1 2. Materials and Methods 6 2.1 Samples collection 6 2.2 Species identification 6 2.3 DNA extraction 7 2.4 Polymerase chain reaction (PCR) amplification and sequencing 8 2.5 Phylogeny reconstruction and network analysis 8 3. Results 11 3.1 Taxonomic account 11 3.2 Molecular characters 16 3.3 Phylogenetic analyses 16 4. Discussion 18 4.1 Natural groups of Polycarpa 18 4.2 Distribution and abundance of Polycarpa species 18 4.3 Molecular data confirms morphological identification 19 4.4 The evolution of reproduction mode 20 4.5 Genetic divergence without morphological change in Polycarpa rima 21 4.6 Conclusions 22 5. References 23 Tables. 29 Figures. 33 Appendices 49 | |
dc.language.iso | en | |
dc.title | 台灣產多囊海鞘屬之分類及分子親緣關係 | zh_TW |
dc.title | The Taxonomy and Molecular Phylogeny of Solitary Ascidians Genus Polycarpa (Stolidobranchia: Styelidae) in Taiwan | en |
dc.type | Thesis | |
dc.date.schoolyear | 95-2 | |
dc.description.degree | 碩士 | |
dc.contributor.oralexamcommittee | 于宏燦(Hon-Tsen Yu),高孝偉,陳昭倫 | |
dc.subject.keyword | 海鞘,生殖模式,親緣關係,分類, | zh_TW |
dc.subject.keyword | Ascidian,Reproductive mode,Phylogeny,Taxonomy, | en |
dc.relation.page | 28 | |
dc.rights.note | 有償授權 | |
dc.date.accepted | 2007-07-26 | |
dc.contributor.author-college | 理學院 | zh_TW |
dc.contributor.author-dept | 海洋研究所 | zh_TW |
顯示於系所單位: | 海洋研究所 |
文件中的檔案:
檔案 | 大小 | 格式 | |
---|---|---|---|
ntu-96-1.pdf 目前未授權公開取用 | 2.6 MB | Adobe PDF |
系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。