請用此 Handle URI 來引用此文件:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/27252
完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 鍾國芳 | |
dc.contributor.author | Chia-Yu Lin | en |
dc.contributor.author | 林家瑜 | zh_TW |
dc.date.accessioned | 2021-06-12T17:59:10Z | - |
dc.date.available | 2014-08-23 | |
dc.date.copyright | 2011-08-23 | |
dc.date.issued | 2011 | |
dc.date.submitted | 2011-08-09 | |
dc.identifier.citation | 59
References AMEZQUITA, A., A. P. LIMA, R. JEHLE, L. CASTELLANOS, O. RAMOS, A. J. CRAWFORD, H. GASSER, et al. 2009. Calls, colours, shape, and genes: a multi trait approach to the study of geographic variation in the Amazonian frog Allobates femoralis. Biological Journal of the Linnean Society 98: 826-838. BALDWIN, B. G., and M. J. SANDERSON. 1998. Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proceedings of the National Academy of Sciences of the United States of America 95: 9402-9406. BENNETT, K. D., P. C. TZEDAKIS, and K. J. WILLIS. 1991. Quaternary refugia of North European trees. Journal of Biogeography 18: 103-115. BERGSTEN, J. 2005. A review of long branch attraction. Cladistics 21: 163-193. BICKFORD, D., D. J. LOHMAN, N. S. SODHI, P. K. L. NG, R. MEIER, K. WINKER, K. K. INGRAM, et al. 2007. Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22: 148-155. BITTKAU, C., and H. P. COMES. 2005. Evolutionary processes in a continental island system: Molecular phylogeography of the Aegean Nigella arvensis alliance (Ranunculaceae) inferred from chloroplast DNA. Molecular Ecology 14: 4065-4083. BOUGHMAN, J. W. 2002. How sensory drive can promote speciation. Trends in Ecology & Evolution 17: 571-577. BRAUN, E. L., and R. T. KIMBALL. 2001. Polytomies, the power of phylogenetic inference, and the stochastic nature of molecular evolution: a comment on Walsh et al. (1999). Evolution 55: 1261-1263. BREMER, K. 1994. Branch support and tree stability. Cladistics 10: 295-304. BRITTON-DAVIDIAN, J., J. CATALAN, M. D. RAMALHINHO, G. GANEM, J. C. AUFFRAY, R. CAPELA, M. BISCOITO, et al. 2000. Rapid chromosomal evolution in island mice. Nature 403: 158-158. CAIN, A. J. 1954. Animal Species and Their Evolution. Hutchinson University Library, London. CALENDINI, F., and J. MARTIN. 2005. PaupUP v1. 0.3. 1 A free graphical frontend for Paup* Dos software. URL: http://www.agro-montpellier.fr/sppe/Recherche/JFM/PaupUp/main.htm. CAMARGO, A., B. SINERVO, and J. W. SITES. 2010. Lizards as model organisms for linking phylogeographic and speciation studies. Molecular Ecology 19: 3250-3270. 60 CAMERON, R., L. COOK, and J. HALLOWS. 1996. Land snails on Porto Santo: Adaptive and non-adaptive radiation. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 351: 309. CARR, D. E. 1996. Morphological veriation among species and populations of salamanders in the Plethodon glutinosus Complex. Herpetologica 52: 56-65. CASTELEYN, G., F. LELIAERT, T. BACKELJAU, A. E. DEBEER, Y. KOTAKI, L. RHODES, N. LUNDHOLM, et al. 2010. Limits to gene flow in a cosmopolitan marine planktonic diatom. Proceedings of the National Academy of Sciences of the United States of America 107: 12952-12957. CLEMENT, W. L., M. C. TEBBITT, L. L. FORREST, J. E. BLAIR, L. BROUILLET, T. ERIKSSON, and S. M. SWENSEN. 2004. Phylogenetic position and biogeography of Hillebrandia sandwicensis (Begoniaceae): A rare Hawaiian relict. American Journal of Botany 91: 905-917. CLEMENTS, R., N. S. SODHI, M. SCHILTHUIZEN, and P. K. L. NG. 2006. Limestone karsts of Southeast Asia: Imperiled arks of biodiversity. BioScience 56: 733-742. CLEMENTS, R., P. K. L. NG, X. X. LU, S. AMBU, M. SCHILTHUIZEN, and C. J. A. BRADSHAW. 2008. Using biogeographical patterns of endemic land snails to improve conservation planning for limestone karsts. Biological Conservation 141: 2751-2764. COMES, H., A. TRIBSCH, and C. BITTKAU. 2008. Plant speciation in continental island floras as exemplified by Nigella in the Aegean Archipelago. Philosophical Transactions of the Royal Society B: Biological Sciences 363: 3083. COMES, H. P., and J. W. KADEREIT. 1998. The effect of Quaternary climatic changes on plant distribution and evolution. Trends in plant science 3: 432-438. CRISTINA ACOSTA, M., and A. C. PREMOLI. 2010. Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae). Molecular Phylogenetics and Evolution 54: 235-242. DAVIS, S. D., V. H. HEYWOOD, and A. C. HAMILTON. 1995. Centres of Plant Diversity: A guide Strategy for Their Conservation, Vol. 2. Australia Asia and the Pacific. IUCN-The World Conservation Union, Publications Services Unit, Cambridge. DE WILDE, J. J. F. E., and V. PLANA. 2003. A new section of Begonia (Begoniaceae) from West Central Africa. Edinburgh Journal of Botany 60: 121-130. DEMESURE, B., N. SODZI, and R. J. PETIT. 1995. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology 4: 129-134. 61 DESALLE, R., R. ABSHER, and G. AMATO. 1994. Speciation and phylogenetic resolution. Trends in Ecology & Evolution 9: 297-298. DOORENBOS, J., M. S. M. SOSEF, and J. J. F. E. D. WILDE. 1998. The Sections of Begonia. Wageningen Agriculture University, Wageningen. DOYLE, J., and J. DOYLE. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15. ERSTS, P. 2008. Geographic distance matrix generator (version 1.2. 2). C. f. American Museum of Natural History. Available from biodiversityinformatics. amnh. org/open_source/gdmg [accessed 2008]. FARRIS, J. S., M. KALLERSJO, A. G. KLUGE, and C. BULT. 1994. Testing significance of incongruence. Cladistics 10: 315-319. FEHRER, J., B. GEMEINHOLZER, J. CHRTEK JR, and S. BRÄUTIGAM. 2007. Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae). Molecular Phylogenetics and Evolution 42: 347-361. FELSENSTEIN, J. 1985a. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39: 783-791. FELSENSTEIN, J. 1985b. Confidence-Limits on Phylogenies with a Molecular Clock. Systematic Zoology 34: 152-161. FELSENSTEIN, J. 2004. Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts. FLAGEL, L. E., R. A. RAPP, C. E. GROVER, M. P. WIDRLECHNER, J. HAWKINS, J. L. GRAFENBERG, I. ALVAREZ, et al. 2008. Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea. American Journal of Botany 95: 756-765. FORREST, L., and P. HOLLINGSWORTH. 2003. A recircumscription of Begonia based on nuclear ribosomal sequences. Plant Systematics and Evolution 241: 193-211. FORREST, L., M. HUGHES, P. HOLLINGSWORTH, and W. ZOMLEFER. 2005. A phylogeny of Begonia using nuclear ribosomal sequence data and morphological characters. Systematic Botany 30: 671-682. FOUQUET, A., A. GILLES, M. VENCES, C. MARTY, M. BLANC, and N. J. GEMMELL. 2007a. Underestimation of species richness in Neotropical frogs revealed by mtDNA analyses. PLoS one 2: e1109. FOUQUET, A., M. VENCES, M.-D. SALDUCCI, A. MEYER, C. MARTY, M. BLANC, and A. GILLES. 2007b. Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups. Molecular Phylogenetics and Evolution 43: 567-582. 62 FRODIN, D. G. 2004. History and concepts of big plant genera. Taxon 53: 753-776. FUNK, W. C., and M. A. MURPHY. 2010. Testing evolutionary hypotheses for phenotypic divergence using landscape genetics. Molecular Ecology 19: 427-430. GITTENBERGER, E. 1991. What about non adaptive radiation? Biological Journal of the Linnean Society 43: 263-272. GOODALL-COPESTAKE, W. P., S. PEREZ-ESPONA, D. J. HARRIS, and P. M. HOLLINGSWORTH. 2010. The early evolution of the mega-diverse genus Begonia (Begoniaceae) inferred from organelle DNA phylogenies. Biological Journal of the Linnean Society 101: 243-250. GRANT, P. R. 1999. Ecology and Evolution of Darwin's Finches. Princeton University Press, New Jersey. GRIVET, D., and R. J. PETIT. 2002. Phylogeography of the common ivy (Hedera sp.) in Europe: genetic differentiation through space and time. Molecular Ecology 11: 1351-1362. GU, C., C.-I. PENG, and N. J. TURLAND. 2007. Begoniaceae. In Z. Y. Wu, P. H. Raven, and D. Y. Hong [eds.], Flora of China, vol. 13, Flora of China, 153-207. Science Press and Missouri Botanical Garden, Beijing and St. Louis. HAFFER, J. 1969. Speciation in Amazonian forest birds. Science 165: 131-137. HEWITT, G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907-913. HEWITT, G. M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society 58: 247-276. HIGHTON, R., G. C. MAHA, and L. R. MAXSON. 1989. Biochemical evolution in the slimy salamanders of the Plethodon glutinosus complex in the eastern United States. Illinois biological monographs (USA). HOELZER, G. A., and D. J. MEINICK. 1994. Patterns of speciation and limits to phylogenetic resolution. Trends in Ecology & Evolution 9: 104-107. HOELZER, G. A., R. DREWES, J. MEIER, and R. DOURSAT. 2008. Isolation-by-distance and outbreeding depression are sufficient to drive parapatric speciation in the absence of environmental influences. Plos Computational Biology 4. HOU, M. F., J. LOPEZ-PUJOL, H. N. QIN, L. S. WANG, and Y. LIU. 2010. Distribution pattern and conservation priorities for vascular plants in Southern China: Guangxi Province as a case study. Botanical Studies 51: 377-386. HUGHES, C., and R. EASTWOOD. 2006. Island radiation on a continental scale: Exceptional rates of plant diversification after uplift of the Andes. Proceedings 63 of the National Academy of Sciences of the United States of America 103: 10334-10339. HUGHES, M., and M. PULLAN. 2007. Southeast Asian Begonia database. Electronic publication accessible via www. rbge. org. uk. HUGHES, M., and P. M. HOLLINGSWORTH. 2008. Population genetic divergence corresponds with species-level biodiversity patterns in the large genus Begonia. Molecular Ecology 17: 2643-2651. HUGHES, M., P. M. HOLLINGSWORTH, and J. SQUIRRELL. 2002. Isolation of polymorphic microsatellite markers for Begonia sutherlandii Hook. f. Molecular Ecology Notes 2: 185-186. HUGHES, M., P. M. HOLLINGSWORTH, and A. G. MILLER. 2003. Population genetic structure in the endemic Begonia of the Socotra archipelago. Biological Conservation 113: 277-284. HUNTLEY, B., and H. BIRKS. 1983. An atlas of past and present pollen maps for Europe: 0-13000 years ago. Cambridge University Press, Cambridge. IRMSCHER, E. 1939. Die begoniaceen Chinas und ihre Bedeutung fur die Frage der Formbildung in polymorphen Sippen. Mitteilungen aus dem Institut für Allgemeine Botanik in Hamburg 10: 431-557. IRWIN, D. E., S. BENSCH, and T. D. PRICE. 2001a. Speciation in a ring. Nature 409: 333-337. IRWIN, D. E., J. H. IRWIN, and T. D. PRICE. 2001b. Ring species as bridges between microevolution and speciation. Genetica 112: 223-243. IRWIN, D. E., S. BENSCH, J. H. IRWIN, and T. D. PRICE. 2005. Speciation by distance in a ring species. Science 307: 414-416. JIN, X. B., and F. H. WANG. 1994. Style and ovary anatomy of Chinese Begonia and its taxonomic and evolutionary implications. Cathaya 6: 125-144. JORDAN, D. S. 1905. The origin of species through isolation. Science 22: 545. KAWATA, M. 2002. Invasion of vacant niches and subsequent sympatric speciation. Proceedings of the Royal Society of London Series B-Biological Sciences 269: 55-63. KIEW, R. 1998. Niche partitioning in limestone begonias in Sabah, Borneo, including two new species. Gardens' Bulletin Singapore 50: 161-169. KIEW, R. 2001. The limestone begonias of Sabah, Borneo - Flagship species for conservation. Gardens' Bulletin Singapore 53: 241-286. 64 KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Systematic Biology 38: 7-25. KLUGE, A. G. 1998. Total evidence or taxonomic congruence: Cladistics or consensus classification. Cladistics 14: 151-158. KOPPERUD, C., and J. W. EINSET. 1995. DNA Isolation from Begonia Leaves. Plant Molecular Biology Reporter 13: 129-130. KOZAK, K. H., and J. WIENS. 2006. Does niche conservatism promote speciation? A case study in north american salamanders. Evolution 60: 2604-2621. KOZAK, K. H., D. W. WEISROCK, and A. LARSON. 2006. Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae : Plethodon). Proceedings of the Royal Society B-Biological Sciences 273: 539-546. KU, S.-M. 2006. Systematics of Begonia sect. Coelocentrum (Begoniaceae) of China. Master of Science, National Cheng-Kung University, Tainan. KU, S.-M., Y. KONO, and Y. LIU. 2008. Begonia pengii (sect. Coelocentrum, Begoniaceae), a new species from limestone areas in Guangxi, China. Botanical Studies 49: 167-175. LóPEZ-PUJOL , J., F.-M. ZHANG, H.-Q. SUN, T.-S. YING, and S. GE. 2011. Centres of plant endemism in China: places for survival or for speciation? Journal of Biogeography 38: 1267-1280. LACK, D. L. 1983. Darwin's Finches. Cambridge University Press, Cambridge. LARKIN, M. A., G. BLACKSHIELDS, N. P. BROWN, R. CHENNA, P. A. MCGETTIGAN, H. MCWILLIAM, F. VALENTIN, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948. LEE, C., and J. WEN. 2004. Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Molecular Phylogenetics and Evolution 31: 894-903. LELE, S., and J. T. RICHTSMEIER. 1991. Euclidean distance matrix analysis: a coordinate-free approach for comparing biological shapes using landmark data. American Journal of Physical Anthropology 86: 415-427. LIN, C. R., C. I. PENG, Y. KONO, and L. YAN. 2010. Aspidistra obconica, Asparagaceae [Ruscaceae], a new species from limestone areas in Guangxi, China. Botanical Studies 51: 263-268. MÜLLER, K. 2004. PRAP--computation of Bremer support for large data sets. Molecular Phylogenetics and Evolution 31: 780-782. 65 MATOLWENI, L. O., K. BALKWILL, and T. MCLELLAN. 2000. Genetic diversity and gene flow in the morphologically variable, rare endemics Begonia dregei and Begonia homonyma (Begoniaceae). American Journal of Botany 87: 431-439. MATTHEWS, M. L., and P. K. ENDRESS. 2004. Comparative floral structure and systematics in Cucurbitales (Corynocarpaceae, Coriariaceae, Tetramelaceae, Datiscaceae, Begoniaceae, Cucurbitaceae, Anisophylleaceae). Botanical Journal of the Linnean Society 145: 129-185. MAYR, E. 1942. Systematics and the origin of species, from the viewpoint of a zoologist. Harvard University Press, Cambridge. MCCORMACK, J. E., A. J. ZELLMER, and L. L. KNOWLES. 2010. Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests with niche models. Evolution 64: 1231-1244. MCLELLAN, T. 1990. Development of differences in leaf shape in Begonia dregei (Begoniaceae). American Journal of Botany 77: 323-337. MCLELLAN, T. 2000. Geographic variation and plasticity of leaf shape and size in Begonia dregei and B. homonyma (Begoniaceae). Botanical Journal of the Linnean Society 132: 79-95. MILLS, S., D. H. LUNT, and A. GOMEZ. 2007. Global isolation by distance despite strong regional phylogeography in a small metazoan. BMC Evolutionary Biology 7: 225. MYERS, N., R. A. MITTERMEIER, C. G. MITTERMEIER, G. A. B. DA FONSECA, and J. KENT. 2000. Biodiversity hotspots for conservation priorities. Nature 403: 853-858. NEALE, S., W. GOODALL-COPESTAKE, and C. A. KIDNER. 2006. The Evolution of Diversity in Begonia. In J. A. T. d. Silva [ed.], Floriculture, Ornamental and Plant Biotechnology, 606-611. Global Science Books, Ltd. NEKOLA, J. C. 1999. Paleorefugia and neorefugia: The influence of colonization history on community pattern and process. Ecology 80: 2459-2473. NIXON, K. C. 1999. The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414. NORUSIS, M. J. 1990. SPSS Advanced Statistics User's Guide. SPSS, Chicago. NOSIL, P., S. P. EGAN, D. J. FUNK, and H. HOEKSTRA. 2008. Heterogeneous genomic differentiation between walking-stick ecotypes:'isolation by adaptation' and multiple roles for divergent selection. Evolution 62: 316-336. NYLANDER, J. 2004. MrModeltest v2. Evolutionary Biology Centre, Uppsala University. 66 OGINUMA, K., and C. I. PENG. 2002. Karyomorphology of Taiwanese Begonia (Begoniaceae): taxonomic implications. Journal of Plant Research 115: 225-235. OKUYAMA, Y., N. FUJII, M. WAKABAYASHI, A. KAWAKITA, M. ITO, M. WATANABE, N. MURAKAMI, et al. 2005. Nonuniform concerted evolution and chloroplast capture: heterogeneity of observed introgression patterns in three molecular data partition phylogenies of Asian Mitella (Saxifragaceae). Molecular Biology and Evolution 22: 285-296. OLMSTEAD, R. G., B. BREMER, K. M. SCOTT, and J. D. PALMER. 1993. A parsimony analysis of the Asteridae sensu lato based on rbcL sequences. Annals of the Missouri Botanical Garden 80: 700-722. PANHUIS, T. M., R. BUTLIN, M. ZUK, and T. TREGENZA. 2001. Sexual selection and speciation. Trends in Ecology & Evolution 16: 364-371. PENG, C.-I., and Y.-K. CHEN. 1991. Hybridity and parentage of Begonia buimontana Yamamoto (Begoniaceae) from Taiwan. Annals of the Missouri Botanical Garden 78: 995-1001. PENG, C.-I., and C.-Y. SUE. 2000. Begonia xtaipeiensis (Begoniaceae), a new natural hybrid in Taiwan. Botanical Bulletin of Academia Sinica 41: 151-158. PENG, C.-I., and S.-M. KU. 2009. Begonia xchungii (Begoniaceae), a new natural hybrid in Taiwan. Botanical Studies 50: 241-250. PENG, C.-I., W.-C. LEONG, and Y.-M. SHUI. 2006. Novelties in Begonia sect. Platycentrum for China: B. crocea, sp nov and B. xanthina Hook., a new distributional record. Botanical Studies 47: 89-96. PENG, C.-I., T.-Y. HSIEH, and Q. H. NGYUEN. 2007. Begonia kui (sect. Coelocentrum, Begoniaceae), a new species from Vietnam. Botanical Studies 48: 127-132. PENG, C.-I., S.-M. KU, Y. KONO, K.-F. CHUNG, and Y. LIU. 2008. Two new species of Begonia (sect. Coelocentrum, Begoniaceae) from limestone areas in Guangxi, China: B. arachnoidea and B. subcoriacea. Botanical Studies 49: 405-418. PENG, C.-I., Y. LIU, S.-M. KU, Y. KONO, and K.-F. CHUNG. 2010. Begonia xbreviscapa (Begoniaceae), a new intersectional natural hybrid from limestone areas in Guangxi, China. Botanical Studies 51: 107-117. PETIT, R. J., B. COMPS, D. GOMORY, J. LETOUZEY, and B. THIEBAUT. 2001. Diverging trends between heterozygosity and allelic richness during postglacial colonization in the European beech. Genetics 157: 389-397. PETIT, R. J., I. AGUINAGALDE, J. L. DE BEAULIEU, C. BITTKAU, S. BREWER, R. CHEDDADI, R. ENNOS, et al. 2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300: 1563-1565. 67 PLANA, V. 2003. Phylogenetic relationships of the Afro-Malagasy members of the large genus Begonia inferred from trnL intron sequences. Systematic Botany 28: 693-704. PLANA, V., A. GASCOIGNE, L. L. FORREST, D. HARRIS, and R. T. PENNINGTON. 2004. Pleistocene and pre-pleistocene Begonia speciation in Africa. Molecular Phylogenetics and Evolution 31: 449-461. POSADA, D., and K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818. QIN, H., Y. LIU, S. YU, W. XU, and M. HOU. 2010. A checklist of vascular plants of Guangxi. Science Press, Beijing. REITSMA, J. M. 1983. Placentation in Begonias from the African continent. Meded. Landbouwhogesch. Wageningen 83: 21-53. RICHARDSON, J. E., F. M. WEITZ, M. F. FAY, Q. C. B. CRONK, H. P. LINDER, G. REEVES, and M. W. CHASE. 2001. Rapid and recent origin of species richness in the Cape flora of South Africa. Nature 412: 181-183. RONQUIST, F., and J. P. HUELSENBECK. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. SCHILTHUIZEN, M., M. I. F. TERAVAINEN, N. F. K. TAWITH, H. IBRAHIM, S. I. M. M. E. I. CHEA, C. P. O. W. CHUAN, L. J. DAIM, et al. 2002. Microsnails at microscales in Borneo: distributions of Prosobranchia versus Pulmonata. Journal of molluscan studies 68: 255. SCHLICHTING, C. D. 1986. The evolution of phenotypic plasticity in plants. Annual Review of Ecology and Systematics 17: 667-693. SCHLUTER, D. 2000. The Ecology of Adaptive Radiation. Oxford University Press, Oxford SEEHAUSEN, O. 2006. African cichlid fish: a model system in adaptive radiation research. Proceedings of the Royal Society B: Biological Sciences 273: 1987-1998. SHUI, Y.-M., C.-I. PENG, and C.-Y. WU. 2002. Synopsis of the Chinese species of Begonia (Begoniaceae), with a reappraisal of sectional delimitation. Botanical Bulletin of Academia Sinica 43: 313-327. SLATKIN, M. 1985. Gene flow in natural populations. Annual Review of Ecology and Systematics 16: 393-430. SLATKIN, M. 1987. Gene flow and the geographic structure of natural populations. Science 236: 787. 68 SMALL, R. L., J. A. RYBURN, R. C. CRONN, T. SEELANAN, and J. F. WENDEL. 1998. The tortoise and the hare: Choosing between noncoding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. American Journal of Botany 85: 1301-1315. SODHI, N. S., L. P. KOH, B. W. BROOK, and P. K. L. NG. 2004. Southeast Asian biodiversity: an impending disaster. Trends in Ecology & Evolution 19: 654-660. SOKAL, R. R., and D. E. WARTENBERG. 1983. A test of spatial autocorrelation analysis using an isolation-by-distance model. Genetics 105: 219. STAMATAKIS, A., P. HOOVER, and J. ROUGEMONT. 2008. A rapid bootstrap algorithm for the RAxML Web-Servers. Systematic Biology 75: 758-771. STANLEY, S. M. 1998. Macroevolution: Pattern and Process. Johns Hopkins University Press, Baltimore. STRID, A. 1970. Studies in the Aegean flora. XVI. Biosystematics of the Nigella arvensis complex. Opera Botany 28: 1-169. SUATONI, E., S. VICARIO, S. RICE, T. SNELL, and A. CACCONE. 2006. An analysis of species boundaries and biogeographic patterns in a cryptic species complex: The rotifer-Brachionus plicatilis. Molecular Phylogenetics and Evolution 41: 86-98. SWOFFORD, D. L. 2003. PAUP*: Phylogenetic Analysis Using Parsimony (*and other methods). version 4.0b10. TABERLET, P., L. GIELLY, G. PAUTOU, and J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109. TAMURA, K., J. DUDLEY, M. NEI, and S. KUMAR. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599. TEBBITT, M. C., L. LOWE-FORREST, A. SANTORIELLO, W. L. CLEMENT, and S. M. SWENSEN. 2006. Phylogenetic relationships of Asian Begonia, with an emphasis on the evolution of rain-ballist and animal dispersal mechanisms in sections Platycentrum, Sphenanthera and Leprosae. Systematic Botany 31: 327-336. TEO, L.-L., and R. KIEW. 1999. First record of natural Begonia hybrid in Malaysia. Gardens' Bulletin Singapore 51: 103-118. THOMAS, D., M. HUGHES, T. PHUTTHAI, S. RAJBHANDARY, R. RUBITE, W. ARDI, and J. RICHARDSON. 2011. A non-coding plastid DNA phylogeny of Asian Begonia (Begoniaceae): Evidence for morphological homoplasy and sectional polyphyly. Molecular Phylogenetics and Evolution 60: 428-444. 69 THOMAS, D. C. 2010. Phylogenetics and historical biogeography of Southeast Asian Begonia L. (Begoniaceae). Ph.D., University of Glasgow, Glasgow. TWEEDIE, M. 1961. On certain Mollusca of the Malayan limestone hills. Bulletin of the Raffles Museum 26: 49-65. TZEDAKIS, P. C., I. T. LAWSON, M. R. FROGLEY, G. M. HEWITT, and R. C. PREECE. 2002. Buffered tree population changes in a quaternary refugium: Evolutionary implications. Science 297: 2044-2047. VERMEULEN, J., and T. WHITTEN. 1999. Biodiversity and Cultural Property in the Management of Limestone Resources: Lessons from East Asia. World Bank Publications. WALSH, H. E., M. G. KIDD, T. MOUM, and V. L. FRIESEN. 1999. Polytomies and the power of phylogenetic inference. Evolution 53: 932-937. WANG, I. J., and K. SUMMERS. 2010. Genetic structure is correlated with phenotypic divergence rather than geographic isolation in the highly polymorphic strawberry poison-dart frog. Molecular Ecology 19: 447-458. WHITTAKER, R. J., and J. M. FERNANDEZ-PALACIOS. 2007. Island biogeography: ecology, evolution, and conservation. Oxford University Press, Oxford. WIENS, J. J. 2004. Speciation and ecology revisited: Phylogenetic niche conservatism and the origin of species. Evolution 58: 193-197. WIENS, J. J., and C. H. GRAHAM. 2005. Niche conservatism: Integrating evolution, ecology, and conservation biology. Annual Review of Ecology, Evolution, and Systematics 36: 519-539. WOODRUFF, D. 2010. Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today’s patterns and the future of the remaining refugial-phase biodiversity. Biodiversity and Conservation 19: 919-941. WRIGHT, S. 1943. Isolation by distance. Genetics 28: 114. XU, Z. R. 1995. A study of the vegetation and floristic affinity of the limestone forests in Southern and Southwestern China. Annals of the Missouri Botanical Garden 82: 570-580. YANG, H.-A. 2011. Hybridization and polyploidization of Taiwanese Begonias. College of Bioresources and Agriculture, National Taiwan University, Taipei. ZHANG, Y.-B., and K.-P. MA. 2008. Geographic distribution patterns and status assessment of threatened plants in China. Biodiversity and Conservation 17: 1783-1798. | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/27252 | - |
dc.description.abstract | 中越邊境喀斯特岩溶地貌蘊含了十分豐富的植物多樣性及特有度,為了解石
灰岩植物多樣性的生成機制,本論文以分布於中越邊境石灰岩地貌的秋海棠來探 討遺傳分化。中越邊境石灰岩秋海棠包含側膜組秋海棠、棒果組秋海棠以及四種 秋海棠組秋海棠,物種數高達七十種。因大部分的石灰岩物種傳播能力不佳且在 高度破碎化的石灰岩生境多呈現狹域分布的格局,推論基因交流的受限可能為造 成其遺傳分化之主因;形態差異主要在營養器官且與環境無明顯相關性,暗示形 態的變異可能為非適應性變化。本研究利用兩段葉綠體 DNA 片段 (trnC-ycf6、 petB-petD) 重建 61 種中越邊境石灰岩秋海棠的親緣關係,並根據親緣關係分析結 果選取四組近緣種支序 (A-D 支序) 以及三種廣泛分布種進行遺傳、地理以及形態 距離三方的相關性檢測。研究結果顯示,中越邊境石灰岩秋海棠形成一支持度不 高的單系群,其內包括十一支亞支序群;種內和種間層級的遺傳距離與地理距離 之相關性檢測,除了 D 支序外,皆具有顯著相關性;葉部形態變異與遺傳及地理 距離的相關性檢測在所有的檢測單位皆不具相關性;花部形態距離與遺傳及地理 距離的相關性檢測在所有的檢測,除了 C 支序外,皆不具相關性。根據分析結果 推論,中越邊境石灰岩秋海棠的高度物種多樣性為輻射演化的結果,傳播能力的 受限以及地理上的隔離為造成種化的重要推手,形態變異依據目前檢測結果傾向 為天擇造成,推論此結果可能與物種因具有棲位保守性相關。 | zh_TW |
dc.description.abstract | V
Abstract The Karst terrains across the Sino-Vietnamese border are known for its extremely high plant diversity and endemism. To understand mechanisms that had generated its remarkable biodiversity, we study patterns of genetic diversification of the Sino-Vietnamese limestone Begonia. About 70 Begonia species are found exclusively in the limestone habitats of the region, including all members of sect. Coelocentrum and sect. Leprosae and four species of sect. Diploclinium. Because most of these limestone species are poor dispersers and have narrow and restricted distributions on the highly fragmented limestone habitats, limited gene flow might have been the major contributor to their genetic diversification. Morphological variation of Sino-Vietnamese limestone Begonia is mainly manifested in vegetative traits that have no apparent correlation to their environments, implying that morphological variation could have been primarily non-adaptive. We collected DNA sequences of two chloroplast intergenic spacers (trnC-ycf6 and petB-petD) of 61 Sino-Vietnamese limestone Begonia species to reconstruct their phylogenetic relationships. Mantel tests between genetic, geographical, and morphological distances were performed for three widespread species and four groups (clade A-D) of closely related species revealed by the phylogenetic trees. Results show that Sino-Vietnamese limestone Begonia group forms a poorly supported clade composed of 11 subclades. A significant positive correlation between genetic and geographic distance was observed in both inter- and intraspecific tests except for clade D. Correlations between morphological distance of leaf traits and genetic distance were not significant in all tests. Correlations between leaf morphological distance and geographic distance were also not significant in all tests. Except for clade C, VI correlations between floral morphological distance and genetic distance were not significant. Correlations between morphological distance of floral traits and geographic distance were not significant except for clade C. Based on these analyses and inferences, the high species diversity of Sino-Vietnamese limestone Begonia appears to be results of species radiation. Limited dispersability and geographic isolation should have played an important role in spawning its species diversity. Morphological variation of these limestone Begonia species appears to be resulted from natural selection, likely related to the strong niche conservatism to their habitats. | en |
dc.description.provenance | Made available in DSpace on 2021-06-12T17:59:10Z (GMT). No. of bitstreams: 1 ntu-100-R98625014-1.pdf: 14873225 bytes, checksum: e96e6ce7ac99cc533dbe90317dbb84a4 (MD5) Previous issue date: 2011 | en |
dc.description.tableofcontents | i
目錄 國立臺灣大學碩博士學位論文口試委員會審定書 .................................... I 誌謝 .............................................................................................................. II 中文摘要 ..................................................................................................... IV Abstract ........................................................................................................ V 圖目錄 .......................................................................................................... iv 表目錄 ......................................................................................................... vii 1. 前言 ........................................................................................................ 1 1.1. 廣西喀斯特石灰岩地區生物多樣性特性 .............................. 1 1.2. 中越邊境石灰岩秋海棠概述 .................................................. 2 1.3. 秋海棠屬植物親緣關係研究 .................................................. 3 1.4. 秋海棠屬植物種化機制假說 .................................................. 4 1.5. 「非」適應性輻射演化 .......................................................... 9 1.6. 生物避難所 ............................................................................ 15 1.7. 研究目的 ................................................................................ 18 2. 材料與方法 .......................................................................................... 19 2.1. 材料取樣 ................................................................................ 19 2.2. 植物全基因組 DNA 之萃取法 ............................................. 19 ii 2.2.1. CTAB DNA 萃取法 ........................................................ 19 2.2.2. Qiagen DNA 萃取組萃取 DNA..................................... 20 2.3. PCR 擴增及定序 .................................................................... 21 2.3.1. 聚合酶連鎖反應 ............................................................. 21 2.3.2. 洋菜膠電泳分析及 PCR 產物純化 ................................ 23 2.3.3. 定序 ................................................................................. 23 2.4. 譜系分析 ................................................................................ 23 2.4.1. 序列整理以及資料矩陣建立 ......................................... 23 2.4.2. 最大簡約性分析 ............................................................. 24 2.4.3. 最大似然性分析 ............................................................. 25 2.4.4. 貝葉氏導出式分析 ......................................................... 25 2.5. 相關性檢測 ............................................................................ 26 3. 結果 ...................................................................................................... 27 3.1. 葉綠體基因片段同質性分析 ................................................ 27 3.2. 葉綠體親緣關係分析 ............................................................ 28 3.3. 相關性檢測 ............................................................................ 35 3.3.1. 地理距離矩陣與遺傳距離矩陣相關性分析 ................. 35 3.3.2. 遺傳距離矩陣與形態距離矩陣相關性分析 ................. 38 3.3.2.1. 總體形態特徵檢測............................................ 38 3.3.2.2. 葉部形態特徵檢測............................................ 38 3.3.2.3. 花部形態特徵檢測............................................ 39 3.3.3. 形態距離矩陣與地理距離矩陣相關性分析 ................. 39 iii 3.3.3.1. 總體形態特徵檢測............................................ 39 3.3.3.2. 葉部形態特徵檢測............................................ 39 3.3.3.3. 花部形態特徵檢測............................................ 39 4. 討論 ...................................................................................................... 47 4.1. 中越邊境石灰岩秋海棠物種多樣性是否為輻射演化? 47 4.2. 中越邊境石灰岩秋海棠的遺傳分化是否符合距離隔離模 式? ................................................................................................ 52 4.3. 中越邊境石灰岩秋海棠的形態變異是否由基因漂變所產 生? ................................................................................................ 56 4.4. 中越邊境石灰岩秋海棠的種化機制 .................................... 57 4.5. 未來研究方向 ........................................................................ 58 附錄一、取樣物種基本資料列表 ............................................................. 70 附錄二、基本形態資料 (Ku, 2006) ......................................................... 77 附錄三、基本形態性狀編碼表 (Ku, 2006) ............................................. 86 附錄四、相關性檢測詳細取樣資料 ......................................................... 92 | |
dc.language.iso | zh-TW | |
dc.title | 喀斯特岩溶植物之種化機制研究—中國石灰岩秋海棠之親緣關係 | zh_TW |
dc.title | Plant speciation in the Karst—Phylogenetics of limestone Begonia in China | en |
dc.type | Thesis | |
dc.date.schoolyear | 99-2 | |
dc.description.degree | 碩士 | |
dc.contributor.coadvisor | 彭鏡毅 | |
dc.contributor.oralexamcommittee | 陳韋仁 | |
dc.subject.keyword | 中越邊境石灰岩秋海棠,非適應輻射演化,距離隔離模式,基因漂變,棲位保守性,生態生境模擬, | zh_TW |
dc.subject.keyword | Sino-Vietnamese limestone Begonia,non-adaptive radiation,isolation by distance,genetic drift,niche conservatism,ecological niche modeling, | en |
dc.relation.page | 92 | |
dc.rights.note | 有償授權 | |
dc.date.accepted | 2011-08-09 | |
dc.contributor.author-college | 生物資源暨農學院 | zh_TW |
dc.contributor.author-dept | 森林環境暨資源學研究所 | zh_TW |
顯示於系所單位: | 森林環境暨資源學系 |
文件中的檔案:
檔案 | 大小 | 格式 | |
---|---|---|---|
ntu-100-1.pdf 目前未授權公開取用 | 14.52 MB | Adobe PDF |
系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。