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完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 賀端華(Tuan-Hua Ho) | |
dc.contributor.author | Ying-Chin Chen | en |
dc.contributor.author | 陳瑩瑾 | zh_TW |
dc.date.accessioned | 2021-06-08T07:03:22Z | - |
dc.date.copyright | 2009-02-03 | |
dc.date.issued | 2009 | |
dc.date.submitted | 2009-01-21 | |
dc.identifier.citation | An, G., Lee, S., Kim, S.H., and Kim, S.R. (2005). Molecular genetics using T-DNA in rice. Plant Cell Physiol 46, 14-22.
Belkhadir, Y., Wang, X., and Chory, J. (2006). Brassinosteroid signaling pathway. Sci STKE 2006, cm4. Bellen, H.J. (1999). Ten years of enhancer detection: lessons from the fly. Plant Cell 11, 2271-2281. Beyer, P., Al-Babili, S., Ye, X., Lucca, P., Schaub, P., Welsch, R., and Potrykus, I. (2002). Golden Rice: introducing the beta-carotene biosynthesis pathway into rice endosperm by genetic engineering to defeat vitamin A deficiency. J Nutr 132, 506S-510S. Cairns, B.R. (1998). Chromatin remodeling machines: similar motors, ulterior motives. Trends Biochem Sci 23, 20-25. Casadaban, M.J., and Cohen, S.N. (1979). Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences. Proc Natl Acad Sci U S A 76, 4530-4533. Chen, S., Jin, W., Wang, M., Zhang, F., Zhou, J., Jia, Q., Wu, Y., Liu, F., and Wu, P. (2003). Distribution and characterization of over 1000 T-DNA tags in rice genome. Plant J 36, 105-113. de Pater, S., Greco, V., Pham, K., Memelink, J., and Kijne, J. (1996). Characterization of a zinc-dependent transcriptional activator from Arabidopsis. Nucleic Acids Res 24, 4624-4631. Davuluri, G.R., van Tuinen, A., Fraser, P.D., Manfredonia, A., Newman, R., Burgess, D., Brummell, D.A., King, S.R., Palys, J., Uhlig, J., Bramley, P.M., Pennings, H.M., and Bowler, C. (2005). Fruit-specific RNAi-mediated suppression of DET1 enhances carotenoid and flavonoid content in tomatoes. Nat Biotechnol 23, 890-895. Deikman, J., Xu, R., Kneissl, M.L., Ciardi, J.A., Kim, K.N., and Pelah, D. (1998). Separation of cis elements responsive to ethylene, fruit development, and ripening in the 5'-flanking region of the ripening-related E8 gene. Plant Mol Biol 37, 1001-1011.Dong, J., Chen, C., and Chen, Z. (2003). Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response. Plant Mol Biol 51, 21-37. Fehlberg, V., Vieweg, M.F., Dohmann, E.M., Hohnjec, N., Puhler, A., Perlick, A.M., and Kuster, H. (2005). The promoter of the leghaemoglobin gene VfLb29: functional analysis and identification of modules necessary for its activation in the infected cells of root nodules and in the arbuscule-containing cells of mycorrhizal roots. J Exp Bot 56, 799-806. Fischer, R., and Emans, N. (2000). Molecular farming of pharmaceutical proteins. Transgenic Res 9, 279-299; discussion 277. Goldberg, R., Barker, S., and Perez-Grau, L.(1989). Regulation of Gene Expression during Plant Embryogenesis. Cell 56, 149-160 Guiderdoni, E., An, G., Yu S-M et al. (2007). T-DNA insertion mutants as a resource for rice functional genomics. In: Upadhyaya NM (ed) Rice functional genomics – challenges, progress and prospects. Springer, pp 181–221 Hirochika, H. (2001). Contribution of the Tos17 retrotransposon to rice functional genomics. Curr Opin Plant Biol 4, 118-122. Hirochika, H., Guiderdoni, E., An, G., Hsing, Y.I., Eun, M.Y., Han, C.D., Upadhyaya, N., Ramachandran, S., Zhang, Q., Pereira, A., Sundaresan, V., and Leung, H. (2004). Rice mutant resources for gene discovery. Plant Mol Biol 54, 325-334. Hsieh, T.H., Lee, J.T., Charng, Y.Y., and Chan, M.T. (2002). Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stress. Plant Physiol 130, 618-626. Hsing, Y.I., Chern, C.G., Fan, M.J., Lu, P.C., Chen, K.T., Lo, S.F., Sun, P.K., Ho, S.L., Lee, K.W., Wang, Y.C., Huang, W.L., Ko, S.S., Chen, S., Chen, J.L., Chung, C.I., Lin, Y.C., Hour, A.L., Wang, Y.W., Chang, Y.C., Tsai, M.W., Lin, Y.S., Chen, Y.C., Yen, H.M., Li, C.P., Wey, C.K., Tseng, C.S., Lai, M.H., Huang, S.C., Chen, L.J., and Yu, S.M. (2007). A rice gene activation/knockout mutant resource for high throughput functional genomics. Plant Mol Biol 63, 351-364. International Rice Genome Sequencing Project. (2005). The map-based sequence of the rice genome. Nature 436, 793-800. Jeong, D.H., An, S., Kang, H.G., Moon, S., Han, J.J., Park, S., Lee, H.S., An, K., and An, G. (2002). T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol 130, 1636-1644. Jeong, D.H., An, S., Park, S., Kang, H.G., Park, G.G., Kim, S.R., Sim, J., Kim, Y.O., Kim, M.K., Kim, J., Shin, M., Jung, M., and An, G. (2006). Generation of a flanking sequence-tag database for activation-tagging lines in japonica rice. Plant J 45, 123-132. Kanazin, V., Ananiev, E., and Blake, T. (1993). Variability among members of the Hor-2 multigene family. Genome 36, 397-403. Keller, B., and Feuillet, C. (2000). Colinearity and gene density in grass genomes. Trends Plant Sci 5, 246-251. Kinoshita, T., Cano-Delgado, A., Seto, H., Hiranuma, S., Fujioka, S., Yoshida, S., and Chory, J. (2005). Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. Nature 433, 167-171. Kolesnik, T., Szeverenyi, I., Bachmann, D., Kumar, C.S., Jiang, S., Ramamoorthy, R., Cai, M., Ma, Z.G., Sundaresan, V., and Ramachandran, S. (2004). Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences. Plant J 37, 301-314. Koo, J., Kim, Y., Kim, J., Yeom, M., Lee, I.C., and Nam, H.G. (2007). A GUS/luciferase fusion reporter for plant gene trapping and for assay of promoter activity with luciferin-dependent control of the reporter protein stability. Plant Cell Physiol 48, 1121-1131. Lanahan, M.B., Ho, T.H., Rogers, S.W., and Rogers, J.C. (1992). A gibberellin response complex in cereal alpha-amylase gene promoters. Plant Cell 4, 203-211. Li, J., Nagpal, P., Vitart, V., McMorris, T.C., and Chory, J. (1996). A role for brassinosteroids in light-dependent development of Arabidopsis. Science 272, 398-401. Miyao, A., Tanaka, K., Murata, K., Sawaki, H., Takeda, S., Abe, K., Shinozuka, Y., Onosato, K., and Hirochika, H. (2003). Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome. Plant Cell 15, 1771-1780. Robert A Meyers. (2005). Encyclopedia of molecular cell biology and molecular medicine, volume 10, 2nd Edition Rogers, J.C., and Rogers, S.W. (1992). Definition and functional implications of gibberellin and abscisic acid cis-acting hormone response complexes. Plant Cell 4, 1443-1451. Rushton, P.J., Macdonald, H., Huttly, A.K., Lazarus, C.M., and Hooley, R. (1995). Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of alpha-Amy2 genes. Plant Mol Biol 29, 691-702. Sallaud, C., Gay, C., Larmande, P., Bes, M., Piffanelli, P., Piegu, B., Droc, G., Regad, F., Bourgeois, E., Meynard, D., Perin, C., Sabau, X., Ghesquiere, A., Glaszmann, J.C., Delseny, M., and Guiderdoni, E. (2004). High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J 39, 450-464. Sambrook, J.a.R., D.W. (2001). Molecular Cloning : A Laboratory Manual. 3rd ed. Cold Spring Harbor Laboratory Press, NY, USA. Singh, K.B. (1998). Transcriptional regulation in plants: the importance of combinatorial control. Plant Physiol 118, 1111-1120. Springer, P.S. (2000). Gene traps: tools for plant development and genomics. Plant Cell 12, 1007-1020. Stanford, W.L., Cohn, J.B., and Cordes, S.P. (2001). Gene-trap mutagenesis: past, present and beyond. Nat Rev Genet 2, 756-768. Struhl, K. (1998). Histone acetylation and transcriptional regulatory mechanisms. Genes Dev 12, 599-606. Sun, C., Palmqvist, S., Olsson, H., Boren, M., Ahlandsberg, S., and Jansson, C. (2003). A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter. Plant Cell 15, 2076-2092. Szekeres, M., Nemeth, K., Koncz-Kalman, Z., Mathur, J., Kauschmann, A., Altmann, T., Redei, G.P., Nagy, F., Schell, J., and Koncz, C. (1996). Brassinosteroids rescue the deficiency of CYP90, a cytochrome P450, controlling cell elongation and de-etiolation in Arabidopsis. Cell 85, 171-182. Topping, J.F., Wei, W., and Lindsey, K. (1991). Functional tagging of regulatory elements in the plant genome. Development 112, 1009-1019. Ulker, B., and Somssich, I.E. (2004). WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol 7, 491-498. Upadhyaya, N.M., Zhu, Q.H., Zhou, X.R., Eamens, A.L., Hoque, M.S., Ramm, K., Shivakkumar, R., Smith, K.F., Pan, S.T., Li, S., Peng, K., Kim, S.J., and Dennis, E.S. (2006). Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice. Theor Appl Genet 112, 1326-1341. van Enckevort, L.J., Droc, G., Piffanelli, P., Greco, R., Gagneur, C., Weber, C., Gonzalez, V.M., Cabot, P., Fornara, F., Berri, S., Miro, B., Lan, P., Rafel, M., Capell, T., Puigdomenech, P., Ouwerkerk, P.B., Meijer, A.H., Pe, E., Colombo, L., Christou, P., Guiderdoni, E., and Pereira, A. (2005). EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice. Plant Mol Biol 59, 99-110. Walbot, V. (2000). Saturation mutagenesis using maize transposons. Curr Opin Plant Biol 3, 103-107. Wang, C.S., and Vodkin, L.O. (1994). Extraction of RNA from tissue containing high levels of procyanidins that bind RNA. Plant Mol. Biol. Rep. 12, 132-145. Wang, L., Xu, Y.Y., Li, J., Powell, R.A., Xu, Z.H., and Chong, K. (2007). Transgenic rice plants ectopically expressing AtBAK1 are semi-dwarfed and hypersensitive to 24-epibrassinolide. J Plant Physiol 164, 655-664. Wang, Z., Zhang, K., Sun, X., Tang, K., and Zhang, J. (2005). Enhancement of resistance to aphids by introducing the snowdrop lectin gene gna into maize plants. J Biosci 30, 627-638. Weber, H., Bernhardt, A., Dieterle, M., Hano, P., Mutlu, A., Estelle, M., Genschik, P., and Hellmann, H. (2005). Arabidopsis AtCUL3a and AtCUL3b form complexes with members of the BTB/POZ-MATH protein family. Plant Physiol 137, 83-93. Wu, C., Li, X., Yuan, W., Chen, G., Kilian, A., Li, J., Xu, C., Zhou, D.X., Wang, S., and Zhang, Q. (2003). Development of enhancer trap lines for functional analysis of the rice genome. Plant J 35, 418-427. Wu, K.L., Guo, Z.J., Wang, H.H., and Li, J. (2005). The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res 12, 9-26. Xie, Z., Zhang, Z.L., Zou, X., Huang, J., Ruas, P., Thompson, D., and Shen, Q.J. (2005). Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol 137, 176-189. | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/26224 | - |
dc.description.abstract | 在調控基因表現的過程中,啟動子 ( promoter ) 扮演著重要的角色。啟動子可控制該基因表現之強度、組織特異性、時期性,以及對環境的反應。在受到不同環境的誘導 (如缺水、高鹽、抗低溫),啟動子決定了基因活化的不同條件。我們可根據啟動子具有專一調控基因表現的分子機制特性,用來導入外來基因,了解與研究基因的功能。組織特異性或可誘發的啟動子可用於比較表現與不表現外源基因對細胞所造成的差異,更可避免持續表現具外源蛋白質所引起的副作用,因此善加利用啟動子的特性,挑選構築表現量高、調控機制健全又不影響植物生理的啟動子成為了實驗設計必需考量的第一步。目前在雙子葉中常被使用的啟動子有:CaMV35S (持續性表現)、CruA (種子專一性)、RubS (葉子專一性)、Pat (球莖專一性)、Spo (塊根專一性);單子葉常使用的則有: Act、Ubi (持續性表現)、Glu (種子專一性)、αAmy (種子發芽專一性)。
利用報導基因隨機插入基因體來尋找基因及啟動子的研究策略已經成功應用在許多不同物種上,包括了細菌、果蠅、老鼠、和植物等。本篇研究利用中央研究院余淑美及邢禹依教授建立之台灣水稻T–DNA插入突變基因庫 ( T–DNA insertional rice mutant library) 中的基因突變水稻作為研究材料。藉由對突變水稻組織之 GUS染色分析,我們得到了四個只有在種子才會有GUS蛋白活性的突變株。經過T–DNA 插入點兩旁序列比對及RT-PCR的實驗分析,我們進一步確認了這些標定基因之種子組織特異性。將這些標定基因的啟動子序列 (長度約2 kb) 與報導基因 GUS 構築表現載體,經轉殖技術 (基因槍暫時表現及農桿菌媒介法) 將之送入野生型水稻中進行表現。基因槍暫時表現實驗結果我們証實M36928A及M29866兩個水稻突變品系為種子組織特異性的,待收到經農桿菌轉殖的轉基因水稻T1種子後,便可確認該啟動子在種子表現的再現性。未來透過對啟動子序列組成的分析,將有助於了解該基因的功能。 | zh_TW |
dc.description.provenance | Made available in DSpace on 2021-06-08T07:03:22Z (GMT). No. of bitstreams: 1 ntu-98-R95b42031-1.pdf: 2378956 bytes, checksum: a21da185510ebbfcd0457b1d6d65d438 (MD5) Previous issue date: 2009 | en |
dc.description.tableofcontents | 中文摘要……………………………………………… i
英文摘要…………………………………………… ii 縮寫字對照表………………………………………… iv 前言…………………………………………………… 1 前人研究……………………………………………… 2 一、水稻功能性基因體研究………………………… 2 二、啟動子的重要性及基因調控…………………… 5 三、尋找啟動子的方法……………………………… 7 四、啟動子的應用…………………………………… 7 五、啟動子應用的例子……………………………… 8 六、利用T-DNA插入突變體庫找尋具種子組織特異性之啟動子 9 材料與方法…………………………………………… 11 一、基因突變水稻…………………………………… 11 二、基因突變水稻種子篩選與分析………………… 11 1.GUS 活性篩選……………………………………… 11 2.Franking sequence 分析………………………… 11 3.Starch/hormone plate assay 澱粉/荷爾蒙培養基分析……13 三、基因表現分析…………………………………… 14 1.Total RNA 之萃取………………………………… 14 2.反轉錄聚合酶連鎖反應…………………………… 14 3.南方墨點分析 ………………………………… 16 四、表現載體構築方法……………………………… 17 1.宿主勝任細胞 ( competent cells ) 的製備…… 18 2.少量質體 DNA 之萃取……………………………… 18 3.大量質體 DNA 之萃取 ……………………… 19 4.聚合酶連鎖反應…………………………………… 20 5.自洋菜瓊脂膠體回收 DNA 片段 ………… 21 6. DNA 片段與載體之黏接作用……………………… 21 7.質體轉型作用-電穿孔法………………………… 21 五、植物基因轉殖及後續分析…………………… 21 1.基因轉殖植物材料……………………………… 21 2.農桿菌媒介基因轉殖法…………………………… 22 3.基因槍短暫性表現………………………………… 24 結果…………………………………………………… 26 討論…………………………………………………… 60 參考文獻……………………………………………… 65 附錄…………………………………………………… 70 | |
dc.language.iso | zh-TW | |
dc.title | 利用T-DNA插入突變水稻基因庫找出種子組織特異性的啟動子 | zh_TW |
dc.title | Screeing of Seed-specific Promoters from T-DNA Insertional Transgenic Rice Plants | en |
dc.type | Thesis | |
dc.date.schoolyear | 97-1 | |
dc.description.degree | 碩士 | |
dc.contributor.coadvisor | 余淑美(Su-May Yu) | |
dc.contributor.oralexamcommittee | 林秋榮 | |
dc.subject.keyword | 水稻,種子,啟動子, | zh_TW |
dc.subject.keyword | rice,seed,promoter, | en |
dc.relation.page | 74 | |
dc.rights.note | 未授權 | |
dc.date.accepted | 2009-01-22 | |
dc.contributor.author-college | 生命科學院 | zh_TW |
dc.contributor.author-dept | 植物科學研究所 | zh_TW |
顯示於系所單位: | 植物科學研究所 |
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