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請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/20200
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dc.contributor.advisor黃銓珍(Chang-Jen Huang)
dc.contributor.authorYong-Sin Jhangen
dc.contributor.author張詠馨zh_TW
dc.date.accessioned2021-06-08T02:42:05Z-
dc.date.copyright2018-02-23
dc.date.issued2018
dc.date.submitted2018-02-06
dc.identifier.citationCarriere, A., Cargnello, M., Julien, L.A., Gao, H., Bonneil, E., Thibault, P., Roux, P.P., 2008. Oncogenic MAPK signaling stimulates mTORC1 activity by promoting RSK-mediated raptor phosphorylation. Curr Biol 18, 1269-1277.
Catena, V., Bruno, T., De Nicola, F., Goeman, F., Pallocca, M., Iezzi, S., Sorino, C., Cigliana, G., Floridi, A., Blandino, G., Fanciulli, M., 2016. Deptor transcriptionally regulates endoplasmic reticulum homeostasis in multiple myeloma cells. Oncotarget 7, 70546-70558.
Chen, Y.H., Lu, Y.F., Ko, T.Y., Tsai, M.Y., Lin, C.Y., Lin, C.C., Hwang, S.P., 2009. Zebrafish cdx1b regulates differentiation of various intestinal cell lineages. Dev Dyn 238, 1021-1032.
Chu, J., Sadler, K.C., 2009. New school in liver development: lessons from zebrafish. Hepatology 50, 1656-1663.
Civera, C., Simon, B., Stier, G., Sattler, M., Macias, M.J., 2005. Structure and dynamics of the human pleckstrin DEP domain: distinct molecular features of a novel DEP domain subfamily. Proteins 58, 354-366.
Consonni, S.V., Maurice, M.M., Bos, J.L., 2014. DEP domains: structurally similar but functionally different. Nat Rev Mol Cell Biol 15, 357-362.
Dumont, F.J., Su, Q., 1996. Mechanism of action of the immunosuppressant rapamycin. Life Sci 58, 373-395.
Field, H.A., Ober, E.A., Roeser, T., Stainier, D.Y., 2003. Formation of the digestive system in zebrafish. I. Liver morphogenesis. Dev Biol 253, 279-290.
Fingar, D.C., Blenis, J., 2004. Target of rapamycin (TOR): an integrator of nutrient and growth factor signals and coordinator of cell growth and cell cycle progression. Oncogene 23, 3151-3171.
Foster, K.G., Acosta-Jaquez, H.A., Romeo, Y., Ekim, B., Soliman, G.A., Carriere, A., Roux, P.P., Ballif, B.A., Fingar, D.C., 2010. Regulation of mTOR complex 1 (mTORC1) by raptor Ser863 and multisite phosphorylation. J Biol Chem 285, 80-94.
Guertin, D.A., Sabatini, D.M., 2009. The pharmacology of mTOR inhibition. Sci Signal 2, pe24.
Guertin, D.A., Stevens, D.M., Saitoh, M., Kinkel, S., Crosby, K., Sheen, J.H., Mullholland, D.J., Magnuson, M.A., Wu, H., Sabatini, D.M., 2009. mTOR complex 2 is required for the development of prostate cancer induced by Pten loss in mice. Cancer Cell 15, 148-159.
Guertin, D.A., Stevens, D.M., Thoreen, C.C., Burds, A.A., Kalaany, N.Y., Moffat, J., Brown, M., Fitzgerald, K.J., Sabatini, D.M., 2006. Ablation in mice of the mTORC components raptor, rictor, or mLST8 reveals that mTORC2 is required for signaling to Akt-FOXO and PKCalpha, but not S6K1. Dev Cell 11, 859-871.
Harris, B.Z., Lim, W.A., 2001. Mechanism and role of PDZ domains in signaling complex assembly. J Cell Sci 114, 3219-3231.
Hentges, K.E., Sirry, B., Gingeras, A.C., Sarbassov, D., Sonenberg, N., Sabatini, D., Peterson, A.S., 2001. FRAP/mTOR is required for proliferation and patterning during embryonic development in the mouse. Proc Natl Acad Sci U S A 98, 13796-13801.
Her, G.M., Chiang, C.C., Chen, W.Y., Wu, J.L., 2003. In vivo studies of liver-type fatty acid binding protein (L-FABP) gene expression in liver of transgenic zebrafish (Danio rerio). FEBS Lett 538, 125-133.
Her, G.M., Yeh, Y.H., Wu, J.L., 2004. Functional conserved elements mediate intestinal-type fatty acid binding protein (I-FABP) expression in the gut epithelia of zebrafish larvae. Dev Dyn 230, 734-742.
Hosokawa, N., Hara, T., Kaizuka, T., Kishi, C., Takamura, A., Miura, Y., Iemura, S., Natsume, T., Takehana, K., Yamada, N., Guan, J.L., Oshiro, N., Mizushima, N., 2009. Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy. Mol Biol Cell 20, 1981-1991.
Huang, J., Manning, B.D., 2009. A complex interplay between Akt, TSC2 and the two mTOR complexes. Biochem Soc Trans 37, 217-222.
Inoki, K., Li, Y., Zhu, T., Wu, J., Guan, K.L., 2002. TSC2 is phosphorylated and inhibited by Akt and suppresses mTOR signalling. Nat Cell Biol 4, 648-657.
Jacinto, E., Loewith, R., Schmidt, A., Lin, S., Ruegg, M.A., Hall, A., Hall, M.N., 2004. Mammalian TOR complex 2 controls the actin cytoskeleton and is rapamycin insensitive. Nat Cell Biol 6, 1122-1128.
Jewell, J.L., Guan, K.L., 2013. Nutrient signaling to mTOR and cell growth. Trends Biochem Sci 38, 233-242.
Karthikeyan, S., Leung, T., Birrane, G., Webster, G., Ladias, J.A., 2001. Crystal structure of the PDZ1 domain of human Na(+)/H(+) exchanger regulatory factor provides insights into the mechanism of carboxyl-terminal leucine recognition by class I PDZ domains. J Mol Biol 308, 963-973.
Kim, D.H., Sarbassov, D.D., Ali, S.M., Latek, R.R., Guntur, K.V., Erdjument-Bromage, H., Tempst, P., Sabatini, D.M., 2003. GbetaL, a positive regulator of the rapamycin-sensitive pathway required for the nutrient-sensitive interaction between raptor and mTOR. Mol Cell 11, 895-904.
Laplante, M., Sabatini, D.M., 2009a. An emerging role of mTOR in lipid biosynthesis. Curr Biol 19, R1046-1052.
Laplante, M., Sabatini, D.M., 2009b. mTOR signaling at a glance. J Cell Sci 122, 3589-3594.
Laplante, M., Sabatini, D.M., 2012. mTOR signaling in growth control and disease. Cell 149, 274-293.
Ma, X.M., Blenis, J., 2009. Molecular mechanisms of mTOR-mediated translational control. Nat Rev Mol Cell Biol 10, 307-318.
Makky, K., Mayer, A.N., 2007. Zebrafish Offers New Perspective on Developmental Role of TOR Signaling. Organogenesis 3, 67-69.
Makky, K., Tekiela, J., Mayer, A.N., 2007. Target of rapamycin (TOR) signaling controls epithelial morphogenesis in the vertebrate intestine. Dev Biol 303, 501-513.
Masuho, I., Wakasugi-Masuho, H., Posokhova, E.N., Patton, J.R., Martemyanov, K.A., 2011. Type 5 G protein beta subunit (Gbeta5) controls the interaction of regulator of G protein signaling 9 (RGS9) with membrane anchors. J Biol Chem 286, 21806-21813.
Montagne, J., Stewart, M.J., Stocker, H., Hafen, E., Kozma, S.C., Thomas, G., 1999. Drosophila S6 kinase: a regulator of cell size. Science 285, 2126-2129.
Murakami, M., Ichisaka, T., Maeda, M., Oshiro, N., Hara, K., Edenhofer, F., Kiyama, H., Yonezawa, K., Yamanaka, S., 2004. mTOR is essential for growth and proliferation in early mouse embryos and embryonic stem cells. Mol Cell Biol 24, 6710-6718.
Ng, A.N., de Jong-Curtain, T.A., Mawdsley, D.J., White, S.J., Shin, J., Appel, B., Dong, P.D., Stainier, D.Y., Heath, J.K., 2005. Formation of the digestive system in zebrafish: III. Intestinal epithelium morphogenesis. Dev Biol 286, 114-135.
Nourry, C., Grant, S.G., Borg, J.P., 2003. PDZ domain proteins: plug and play! Sci STKE 2003, RE7.
Oldham, S., Montagne, J., Radimerski, T., Thomas, G., Hafen, E., 2000. Genetic and biochemical characterization of dTOR, the Drosophila homolog of the target of rapamycin. Genes Dev 14, 2689-2694.
Peterson, T.R., Laplante, M., Thoreen, C.C., Sancak, Y., Kang, S.A., Kuehl, W.M., Gray, N.S., Sabatini, D.M., 2009. DEPTOR is an mTOR inhibitor frequently overexpressed in multiple myeloma cells and required for their survival. Cell 137, 873-886.
Rao, R.D., Buckner, J.C., Sarkaria, J.N., 2004. Mammalian target of rapamycin (mTOR) inhibitors as anti-cancer agents. Curr Cancer Drug Targets 4, 621-635.
Sarbassov, D.D., Ali, S.M., Kim, D.H., Guertin, D.A., Latek, R.R., Erdjument-Bromage, H., Tempst, P., Sabatini, D.M., 2004. Rictor, a novel binding partner of mTOR, defines a rapamycin-insensitive and raptor-independent pathway that regulates the cytoskeleton. Curr Biol 14, 1296-1302.
Tao, T., Peng, J., 2009. Liver development in zebrafish (Danio rerio). J Genet Genomics 36, 325-334.
Walker, C., 1999. Haploid screens and gamma-ray mutagenesis. Methods Cell Biol 60, 43-70.
Wallace, K.N., Akhter, S., Smith, E.M., Lorent, K., Pack, M., 2005. Intestinal growth and differentiation in zebrafish. Mech Dev 122, 157-173.
Wang, L., Harris, T.E., Roth, R.A., Lawrence, J.C., Jr., 2007. PRAS40 regulates mTORC1 kinase activity by functioning as a direct inhibitor of substrate binding. J Biol Chem 282, 20036-20044.
Westerfield, M., 1993. The zebrafish book : a guide for the laboratory use of zebrafish (Brachydanio rerio). M. Westerfield, Eugene, OR.
Wullschleger, S., Loewith, R., Hall, M.N., 2006. TOR signaling in growth and metabolism. Cell 124, 471-484.
Zhang, H., Stallock, J.P., Ng, J.C., Reinhard, C., Neufeld, T.P., 2000. Regulation of cellular growth by the Drosophila target of rapamycin dTOR. Genes Dev 14, 2712-2724.
Zhao, Y., Xiong, X., Sun, Y., 2011. DEPTOR, an mTOR inhibitor, is a physiological substrate of SCF(betaTrCP) E3 ubiquitin ligase and regulates survival and autophagy. Mol Cell 44, 304-316.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/20200-
dc.description.abstract目前已知mammalian target of rapamycin (mTOR) 會調控許多生物機轉,包含細胞生長、存活、以及細胞自噬。先前研究指出 mTOR抑制劑-rapamycin會抑制斑馬魚腸道上皮細胞生長、形態發生與分化。DEP-domain-containing mTOR-interacting protein (DEPTOR) 是mTORC1與 mTORC2的抑制劑,與其他蛋白相互作用調節了細胞增殖與發育。然而,目前對DEPTOR的了解以及發育中的角色還不清楚。因此,在本研究中,我們希望透過斑馬魚動物模式來探討DEPTOR在肝腸早期發育中的功能。
首先,我們選殖了斑馬魚的deptor基因,並將其蛋白序列與人類、老鼠的DEPTOR蛋白序列做比對分析,結果顯示三者蛋白序列之間的保守性相當高。接著我們利用全覆式原位雜合實驗來探討斑馬魚deptor基因內生性mRNA的表現位置,發現於腦部、腸道及肝臟等器官上都有表現。此外,我們以注射deptor mRNA的方式來增加DEPTOR蛋白的表現,結果顯示外觀沒有明顯變化,但會在72 hpf時降低肝臟標記lfabp的表現,120 hpf時降低腸標記ifabp的表達以及減少腸道杯狀細胞數目。 注射deptor mRNA也會降低了raptor和ztor mRNA的表現,從免疫墨點法結果也可得知注射deptor mRNA會抑制mTORC1 下游蛋白S6K 的磷酸化。綜合上述結果顯示,deptor基因會參與了斑馬魚早期肝臟腸道發育。
zh_TW
dc.description.abstractThe mammalian target of rapamycin (mTOR) signaling pathway can regulate cell growth, survival, and autophagy. Previous studies indicated that rapamycin is the mTOR inhibitor. It inhibits zebrafish intestinal epithelial growth, morphogenesis, and differentiation. DEP-domain-containing mTOR-interacting protein (DEPTOR) is the inhibitor of mTORC1 and mTORC2 complex, which is compromised with other proteins to regulate genes expression in cell proliferation and development. However, the role of DEPTOR in the development of liver and intestine is still unknown. Therefore, in this study, we used zebrafish as an animal model to investigate the role of DEPTOR during early development.
We cloned zebrafish deptor gene and performing amino acids sequence alignment between human, mice, and zebrafish and it was highly conserved among these three species. We then performed whole-mount in situ hybridization experiment to analyze the endogenous deptor mRNA expression pattern. The zdeptor mRNA was expressed in the brain from 24 to 72 hpf and in the gut between 48 and 72 hpf. Overexpression of zerbrafish deptor mRNA decreased the expression of liver markers lfabp and intestinal marker ifabp in 72 and 120 hpf. Likewise, the injection of deptor mRNA in 120 hpf decreased alcian blue–stained goblet cell numbers compared to control embryos. In addition, overexpression of deptor mRNA also decreased the expression of raptor and ztor mRNA. The results from western blot indicated that injection of zdeptor mRNA would inhibit mTORC1 downstream protein S6K phosphorylation. In summary, our data indicated that zebrafish deptor gene was involved in liver and gut development.
en
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Previous issue date: 2018
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dc.description.tableofcontents論文口試委員審定書 i
誌謝 ii
中文摘要 iii
Abstract iv
Content v
Introduction 1
mTOR protein 1
The mTORC1 and mTORC2 1
mTOR plays an important role in the development of early embryos. 3
Rapamycin 3
DEPTOR 4
DEP domain and PDZ domain 4
Materials and methods 7
Zebrafish care and maintenance 7
Zebrafish strains 7
Cloning of full-length of zebrafish and mouse deptor 7
Microinjection of zdeptor and mdeptor mRNA in zebrafish embryos 7
Scoring microinjection phenotypes and statistics 8
RNA Probes synthesis and whole-mount in situ hybridization 8
Cell cultures 9
Cloning of full-length of zebrafish and mouse deptor protein expression vectors 9
The mouse and zebrafish deptor proteins expressed in 293T cells 9
Alcian blue staining 10
Whole-mount immunostaining 10
Western blot 11
RT-PCR 12
Results 13
Genomic organization of zebrafish ortholog of DEPTOR (zdeptor). 13
Expression profiles of deptor mRNA at different developmental stages in zebrafish embryos. 13
Injection of zdeptor mRNA caused abnormal formation of intestine and liver. 14
The deptor antibody labeled cells were found in zebrafish developing gut and liver. 14
Injection of deptor mRNA affects the development of intestine and liver and related marker genes expression. 15
The zdeptor mRNA injection inhibited raptor expression which is a zTORC1 component gene in gut. 16
Injection of deptor mRNA has decreased the amount of S6K protein and increased the p-AKT phosphorylation. 17
The injection of deptor mRNA inhibited the liver cells proliferation. 18
Discussions 19
References 22
Figures 28
Figure 1. Alignment of amino acid sequences of zebrafish, mouse, and human DEPTOR proteins. 28
Figure 2. Expression patterns of zebrafish deptor in various tissue of different developmental stages 29
Figure 3. Injection of zdeptor mRNA caused abnormal formation of intestine and liver 31
Figure 4. Injection of deptor mRNA led to abnormal intestinal development at 120 hpf. 32
Figure 5. Injection of deptor mRNA led to abnormal liver and intestine development. 34
Figure 6. Injection of deptor mRNA decreased the liver and intestine developmental related genes expression 35
Figure 7. Injection of deptor mRNA downregulated ztorc1 expression in developing intestine 37
Figure 8. Detection of p-AKT, AKT, p-S6K, and S6K protein amounts in zebrafish embryos. 38
Figure 9. Whole-mount immunostaining analysis of pHH3+ cells (red) in lfabp:EGFP (green) liver reporter zebrafish at 72 hpf. 39
Table 40
Table 1. primer sequences 40
Table 2. qPCR primer sequences 41
APPENDIX 42
Figure.1. ztor expression during embryonic and larval development. 43
Figure 2. Ventral view of liver development in zebrafish. 44
dc.language.isoen
dc.title探討deptor基因表現對斑馬魚肝和腸發育的影響zh_TW
dc.titleStudy the role of zebrafish deptor gene expression in the development of liver and guten
dc.typeThesis
dc.date.schoolyear106-1
dc.description.degree博士
dc.contributor.oralexamcommittee黃鵬鵬,張茂山,周志銘,鄭嘉雄
dc.subject.keyworddeptor,mTOR,斑馬魚,肝臟,腸道,發育,zh_TW
dc.subject.keyworddeptor,mTOR,zebrafish,liver,gut,development,en
dc.relation.page44
dc.identifier.doi10.6342/NTU201800285
dc.rights.note未授權
dc.date.accepted2018-02-07
dc.contributor.author-college生命科學院zh_TW
dc.contributor.author-dept生化科學研究所zh_TW
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