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  1. NTU Theses and Dissertations Repository
  2. 醫學院
  3. 生物化學暨分子生物學科研究所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/17549
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor余明俊
dc.contributor.authorYi-Hung Chenen
dc.contributor.author陳逸鴻zh_TW
dc.date.accessioned2021-06-08T00:20:22Z-
dc.date.copyright2013-09-24
dc.date.issued2013
dc.date.submitted2013-07-24
dc.identifier.citation1 Freeman, A. J., Dore, G. J., Law, M. G., Thorpe, M., Von Overbeck, J., Lloyd, A. R., Marinos, G. & Kaldor, J. M. Estimating Progression to Cirrhosis in Chronic Hepatitis C Virus Infection. Hepatology 34, 809-816, doi:10.1053/jhep.2001.27831 (2001).
2 Mohd Hanafiah, K., Groeger, J., Flaxman, A. D. & Wiersma, S. T. Global Epidemiology of Hepatitis C Virus Infection: New Estimates of Age-Specific Antibody to Hcv Seroprevalence. Hepatology 57, 1333-1342, doi:10.1002/hep.26141 (2013).
3 Lindenbach, B. D., Evans, M. J., Syder, A. J., Wolk, B., Tellinghuisen, T. L., Liu, C. C., Maruyama, T., Hynes, R. O., Burton, D. R., McKeating, J. A. & Rice, C. M. Complete Replication of Hepatitis C Virus in Cell Culture. Science 309, 623-626, doi:10.1126/science.1114016 (2005).
4 Wakita, T., Pietschmann, T., Kato, T., Date, T., Miyamoto, M., Zhao, Z., Murthy, K., Habermann, A., Krausslich, H. G., Mizokami, M., Bartenschlager, R. & Liang, T. J. Production of Infectious Hepatitis C Virus in Tissue Culture from a Cloned Viral Genome. Nature medicine 11, 791-796, doi:10.1038/nm1268 (2005).
5 Zhong, J., Gastaminza, P., Cheng, G., Kapadia, S., Kato, T., Burton, D. R., Wieland, S. F., Uprichard, S. L., Wakita, T. & Chisari, F. V. Robust Hepatitis C Virus Infection in Vitro. Proceedings of the National Academy of Sciences of the United States of America 102, 9294-9299, doi:10.1073/pnas.0503596102 (2005).
6 Moradpour, D., Penin, F. & Rice, C. M. Replication of Hepatitis C Virus. Nature reviews. Microbiology 5, 453-463, doi:10.1038/nrmicro1645 (2007).
7 Lin, C., Kwong, A. D. & Perni, R. B. Discovery and Development of Vx-950, a Novel, Covalent, and Reversible Inhibitor of Hepatitis C Virus Ns3.4a Serine Protease. Infectious disorders drug targets 6, 3-16 (2006).
8 Chen, K. X. & Njoroge, F. G. The Journey to the Discovery of Boceprevir: An Ns3-Ns4 Hcv Protease Inhibitor for the Treatment of Chronic Hepatitis C. Progress in medicinal chemistry 49, 1-36, doi:10.1016/S0079-6468(10)49001-3 (2010).
9 Evans, M. J., Rice, C. M. & Goff, S. P. Phosphorylation of Hepatitis C Virus Nonstructural Protein 5a Modulates Its Protein Interactions and Viral Rna Replication. Proceedings of the National Academy of Sciences of the United States of America 101, 13038-13043, doi:10.1073/pnas.0405152101 (2004).
10 Huang, Y., Staschke, K., De Francesco, R. & Tan, S. L. Phosphorylation of Hepatitis C Virus Ns5a Nonstructural Protein: A New Paradigm for Phosphorylation-Dependent Viral Rna Replication? Virology 364, 1-9, doi:10.1016/j.virol.2007.01.042 (2007).
11 Popescu, C. I., Callens, N., Trinel, D., Roingeard, P., Moradpour, D., Descamps, V., Duverlie, G., Penin, F., Heliot, L., Rouille, Y. & Dubuisson, J. Ns2 Protein of Hepatitis C Virus Interacts with Structural and Non-Structural Proteins Towards Virus Assembly. PLoS pathogens 7, e1001278, doi:10.1371/journal.ppat.1001278 (2011).
12 Tellinghuisen, T. L., Foss, K. L. & Treadaway, J. Regulation of Hepatitis C Virion Production Via Phosphorylation of the Ns5a Protein. PLoS pathogens 4, e1000032, doi:10.1371/journal.ppat.1000032 (2008).
13 Manns, M. P., Foster, G. R., Rockstroh, J. K., Zeuzem, S., Zoulim, F. & Houghton, M. The Way Forward in Hcv Treatment--Finding the Right Path. Nature reviews. Drug discovery 6, 991-1000, doi:10.1038/nrd2411 (2007).
14 Francois, C., Castelain, S., Duverlie, G., Capron, D. & Nguyen-Khac, E. Optimizing the Treatment of Chronic Viral Hepatitis C. Expert review of gastroenterology & hepatology 3, 607-613, doi:10.1586/egh.09.60 (2009).
15 Shiffman, M. L. & Esteban, R. Triple Therapy for Hcv Genotype 1 Infection: Telaprevir or Boceprevir? Liver international : official journal of the International Association for the Study of the Liver 32 Suppl 1, 54-60, doi:10.1111/j.1478-3231.2011.02718.x (2012).
16 Sulkowski, M., Gardiner, D., Rodriguez-Torres, M., Reddy, K., Hassanein, T., Jacobson, I., Lawitz, E., Lok, A., Hinestrosa, F. & Thuluvath, P. Sustained Virologic Response with Daclatasvir Plus Sofosbuvir ± Ribavirin (Rbv) in Chronic Hcv Genotype (Gt) 1-Infected Patients Who Previously Failed Telaprevir (Tvr) or Boceprevir (Boc). J Hepatol 58, S570 (2013).
17 He, Y., Staschke, K. A. & Tan, S. L. in Hepatitis C Viruses: Genomes and Molecular Biology (2006).
18 Pawlotsky, J. M. Hepatitis C Virus (Hcv) Ns5a Protein: Role in Hcv Replication and Resistance to Interferon-Alpha. Journal of viral hepatitis 6 Suppl 1, 47-48 (1999).
19 Sauter, D., Himmelsbach, K., Kriegs, M., Carvajal Yepes, M. & Hildt, E. Localization Determines Function: N-Terminally Truncated Ns5a Fragments Accumulate in the Nucleus and Impair Hcv Replication. J Hepatol 50, 861-871, doi:10.1016/j.jhep.2008.11.024 (2009).
20 Reed, K. E., Xu, J. & Rice, C. M. Phosphorylation of the Hepatitis C Virus Ns5a Protein in Vitro and in Vivo: Properties of the Ns5a-Associated Kinase. Journal of virology 71, 7187-7197 (1997).
21 Kaneko, T., Tanji, Y., Satoh, S., Hijikata, M., Asabe, S., Kimura, K. & Shimotohno, K. Production of Two Phosphoproteins from the Ns5a Region of the Hepatitis C Viral Genome. Biochemical and biophysical research communications 205, 320-326, doi:10.1006/bbrc.1994.2667 (1994).
22 Gao, L., Aizaki, H., He, J.-W. & Lai, M. M. Interactions between Viral Nonstructural Proteins and Host Protein Hvap-33 Mediate the Formation of Hepatitis C Virus Rna Replication Complex on Lipid Raft. Journal of virology 78, 3480-3488 (2004).
23 Chen, Y. C., Su, W. C., Huang, J. Y., Chao, T. C., Jeng, K. S., Machida, K. & Lai, M. M. Polo-Like Kinase 1 Is Involved in Hepatitis C Virus Replication by Hyperphosphorylating Ns5a. Journal of virology 84, 7983-7993, doi:10.1128/JVI.00068-10 (2010).
24 Chong, W. M., Lan, K. H. & Yu, M. J. Proteomic Identification of a Novel Ns5a Phosphorylation Site Involved in Hepatitis C Virus Replication. J Hepatol 56, S323-S323 (2012).
25 Zhao, X. T., Li, J. J., He, Y. H., Lan, F., Fu, L. L., Guo, J. Y., Zhao, R. J., Ye, Y., He, M., Chong, W. M., Chen, J. G., Zhang, L. S., Yang, N. W., Xu, B. H., Wu, M. C., Wan, D. F. & Gu, J. R. A Novel Growth Suppressor Gene on Chromosome 17p13.3 with a High Frequency of Mutation in Human Hepatocellular Carcinoma. Cancer Res 61, 7383-7387 (2001).
26 Xue, Y., Ren, J., Gao, X., Jin, C., Wen, L. & Yao, X. Gps 2.0, a Tool to Predict Kinase-Specific Phosphorylation Sites in Hierarchy. Molecular & cellular proteomics : MCP 7, 1598-1608, doi:10.1074/mcp.M700574-MCP200 (2008).
27 Anderson, K. A. & Kane, C. D. Ca 2+/Calmodulin-Dependent Protein Kinase Iv and Calcium Signaling. Biometals 11, 331-343 (1998).
28 Rina, S., Jusuf, A. A., Sakagami, H., Kikkawa, S., Kondo, H., Minami, Y. & Terashima, T. Distribution of Ca(2+)/Calmodulin-Dependent Protein Kinase I Beta 2 in the Central Nervous System of the Rat. Brain research 911, 1-11 (2001).
29 Picciotto, M. R., Zoli, M., Bertuzzi, G. & Nairn, A. C. Immunochemical Localization of Calcium/Calmodulin‐Dependent Protein Kinase I. Synapse 20, 75-84 (1995).
30 Wu, J. Y., Gonzalez-Robayna, I. J., Richards, J. S. & Means, A. R. Female Fertility Is Reduced in Mice Lacking Ca2+/Calmodulin-Dependent Protein Kinase Iv. Endocrinology 141, 4777-4783 (2000).
31 Bayer, K., Lohler, J., Schulman, H. & Harbers, K. Developmental Expression of the Cam Kinase Ii Isoforms: Ubiquitous Γ-and Δ-Cam Kinase Ii Are the Early Isoforms and Most Abundant in the Developing Nervous System. Molecular brain research 70, 147-154 (1999).
32 Tobimatsu, T. & Fujisawa, H. Tissue-Specific Expression of Four Types of Rat Calmodulin-Dependent Protein Kinase Ii Mrnas. Journal of Biological Chemistry 264, 17907-17912 (1989).
33 Tombes, R. M., Faison, M. O. & Turbeville, J. Organization and Evolution of Multifunctional Ca2+/CaM-Dependent Protein Kinase Genes. Gene 322, 17-31 (2003).
34 Park, C. Y., Choi, S. H., Kang, S. M., Kang, J. I., Ahn, B. Y., Kim, H., Jung, G., Choi, K. Y. & Hwang, S. B. Nonstructural 5a Protein Activates Beta-Catenin Signaling Cascades: Implication of Hepatitis C Virus-Induced Liver Pathogenesis. J Hepatol 51, 853-864, doi:10.1016/j.jhep.2009.06.026 (2009).
35 Wu, S. C., Chang, S. C., Wu, H. Y., Liao, P. J. & Chang, M. F. Hepatitis C Virus Ns5a Protein Down-Regulates the Expression of Spindle Gene Aspm through Pkr-P38 Signaling Pathway. The Journal of biological chemistry 283, 29396-29404, doi:10.1074/jbc.M802821200 (2008).
36 Neddermann, P., Quintavalle, M., Di Pietro, C., Clementi, A., Cerretani, M., Altamura, S., Bartholomew, L. & De Francesco, R. Reduction of Hepatitis C Virus Ns5a Hyperphosphorylation by Selective Inhibition of Cellular Kinases Activates Viral Rna Replication in Cell Culture. Journal of virology 78, 13306-13314, doi:10.1128/JVI.78.23.13306-13314.2004 (2004).
37 Naccache, P., Molski, T., Alobaidi, T., Becker, E., Showell, H. & Sha'Afi, R. Calmodulin Inhibitors Block Neutrophil Degranulation at a Step Distal from the Mobilization of Calcium. Biochemical and biophysical research communications 97, 62-68 (1980).
38 Sawhney, V., Chopra, V., Kapoor, B., Thappa, J. & Tandon, V. R. Prescription Trends in Schizophrenia and Manic Depressive Psychosis. JK Sci 7, 156-158 (2005).
39 http://www.ncbi.nlm.nih.gov/nuccore/212549755,212549754,212549752,212549751,212549750,212549749.
dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/17549-
dc.description.abstract根據實驗室先前的研究,我們鑑定出一個位於C型肝炎病毒(Hepatitis C virus, HCV)非結構性蛋白5A (Nonstructural protein 5A, NS5A)上的全新磷酸化位點(S1位點),並且發現此位點的磷酸化為病毒RNA複製所必需。此觀察結果促使我們進一步找尋負責此位點磷酸化之磷酸化激酶,因為藉由抑制磷酸化激酶可為治療C型肝炎提供另一替代療法。從電腦演算法預測結果發現鈣調蛋白依賴激酶可能對S1位點進行磷酸化。當我們抑制病毒感染之肝細胞株中的鈣調蛋白(Calmodulin),S1位點之磷酸化程度與病毒RNA數量皆受到抑制。對肝細胞株處理鈣調蛋白依賴激酶II (calmodulin dependent protein kinase II, CaMKII)抑制劑亦獲得相似的結果。藉由反轉錄(Reverse transcription)與聚合連鎖反應(PCR)進一步確認肝細胞株會表現CaMKII γ和δ兩種異構體(Isoform)。抑制肝細胞株內的CaMKII δ表現會進而抑制病毒RNA的數量,而抑制CaMKII γ的表現則沒有此現象,因此我們認為CaMKII δ可能參與S1位點的磷酸化以及抑制CaMKII可以進一步降低S1位點之磷酸化和病毒RNA的數量。zh_TW
dc.description.abstractWe previously identified a novel phosphorylation site S1 in the hepatitis C virus (HCV) nonstructural protein 5A (NS5A) required for HCV replication. These observations provide us the impetus to look for host kinases responsible for its phosphorylation because inhibition of the kinases may be an alternative method for HCV treatment. By using computer algorithms, calmodulin dependent protein kinase (CaMK) was predicted to phosphorylate the S1 site. The S1 site phosphorylation levels and HCV RNA levels were decreased in a dose-dependent manner when we treated infected cells with calmodulin inhibitor (W7). Inhibition of the calmodulin dependent protein kinase II with the inhibitor KN93 produced similar results as the W7 treatment. Reverse transcription and PCR results indicated expression of CaMKII δ and CaMKII γ in the Huh7.5.1 cells. CaMKII δ knockdown, not CaMKII γ knockdown, decreased the HCV RNA in the HCV-infected cells. We conclude that CaMKII δ may be a host kinase responsible for NS5A S1 site phosphorylation and that inhibition of CaMKII diminishes NS5A S1 phosphorylation levels as well as HCV RNA levels in HCV-infected Huh7.5.1 cells.en
dc.description.provenanceMade available in DSpace on 2021-06-08T00:20:22Z (GMT). No. of bitstreams: 1
ntu-102-R00442020-1.pdf: 1185735 bytes, checksum: b604073d83f856841cc9206fbc8fe896 (MD5)
Previous issue date: 2013
en
dc.description.tableofcontents摘要 i
Abstract ii
Introduction 1
Materials & Methods 5
Cell 5
Kinase inhibition assay 5
Immunoblot assay 6
HCV RNA measurement 7
MTT assay 8
Kinases knockdown 8
Results 11
Bioinformatic Analysis of Candidate Kinases for NS5A S1 Phosphorylation 11
Calmodulin Inhibitor W7 Inhibited NS5A S1 Phosphorylation and Decreased HCV RNA levels in HCV-infected Huh7.5.1 Cells 11
CaMKII Inhibitor KN93 Inhibited NS5A S1 Phosphorylation and Decreased HCV RNA Levels in HCV-infected Huh7.5.1 Cells 12
Calmodulin Dependent Protein Kinase II Delta (CaMKII delta) Knockdown Diminished HCV RNA Levels 13
Discussion 15
Table and Figures 18
References 36

List of Figures
Figure 1. Workflow of Kinase Inhibition Experiments 19
Figure 2. Workflow of CaMKII Knockdown Experiments 20
Figure 3. W7 Inhibited NS5A S1 Phosphorylation and Decreased HCV RNA Levels In HCV-infected Huh7.5.1 Cells 21
Figure 4. CaMKII Inhibitor KN93 Inhibited NS5A S1 Phosphorylation and Decreased HCV RNA Levels in HCV-infected Huh7.5.1 Cells 26
Figure 5. Calmodulin Dependent Protein Kinase II Delta (CaMKII delta) Knockdown Diminished HCV RNA Levels 33
List of Table
Table 1. Bioinformatic Analysis of Candidate Kinases for NS5A S1 Phosphorylation 18
dc.language.isoen
dc.title抑制第二型鈣調蛋白依賴激酶δ降低非結構蛋白5A的高度磷酸化以及C型肝炎病毒複製zh_TW
dc.titleInhibition of CaMKII δ Reduced NS5A Hyperphosphorylation and HCV Replicationen
dc.typeThesis
dc.date.schoolyear101-2
dc.description.degree碩士
dc.contributor.oralexamcommittee李明學,楊宏志
dc.subject.keyword鈣調蛋白,鈣調蛋白依賴激?,HCV RNA 複製機轉,宿主激?,HCV療法,zh_TW
dc.subject.keywordCalmodulin,Calmodulin dependent protein kinase II,HCV replication,Host kinase,HCV therapy,en
dc.relation.page39
dc.rights.note未授權
dc.date.accepted2013-07-24
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept生物化學暨分子生物學研究所zh_TW
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