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| DC 欄位 | 值 | 語言 |
|---|---|---|
| dc.contributor.advisor | 孫錦虹(Chin-Hung Sun) | |
| dc.contributor.author | Shih-Che Weng | en |
| dc.contributor.author | 翁仕哲 | zh_TW |
| dc.date.accessioned | 2021-06-08T00:14:44Z | - |
| dc.date.copyright | 2013-09-24 | |
| dc.date.issued | 2013 | |
| dc.date.submitted | 2013-07-31 | |
| dc.identifier.citation | 1. Adam, R. D. (2001) Clinical microbiology reviews 14, 447-475
2. Aravind, L., Leipe, D. D., and Koonin, E. V. (1998) Nucleic acids research 26, 4205-4213 3. Arguello-Garcia, R., Bazan-Tejeda, M. L., and Ortega-Pierres, G. (2009) Parasite 16, 247-258 4. Banerjee, B., Sen, N., and Majumder, H. K. (2011) Enzyme research 2011, 230542 5. Bazan-Tejeda, M. L., Arguello-Garcia, R., Bermudez-Cruz, R. M., Robles-Flores, M., and Ortega-Pierres, G. (2007) Archives of microbiology 187, 55-66 6. Bingham, A. K., and Meyer, E. A. (1979) Nature 277, 301-302 7. Boucher, S. E., and Gillin, F. D. (1990) Infection and immunity 58, 3516-3522 8. Cheng, B., Zhu, C. X., Ji, C., Ahumada, A., and Tse-Dinh, Y. C. (2003) The Journal of biological chemistry 278, 30705-30710 9. Cho, C. C., Su, L. H., Huang, Y. C., Pan, Y. J., and Sun, C. H. (2012) The Journal of biological chemistry 287, 3733-3750 10. Chuang, S. F., Su, L. H., Cho, C. C., Pan, Y. J., and Sun, C. H. (2012) PloS one 7, e30614 11. Dean, F., Krasnow, M. A., Otter, R., Matzuk, M. M., Spengler, S. J., and Cozzarelli, N. R. (1983) Cold Spring Harbor symposia on quantitative biology 47 Pt 2, 769-777 12. DiGate, R. J., and Marians, K. J. (1988) The Journal of biological chemistry 263, 13366-13373 13. DiNardo, S., Voelkel, K. A., Sternglanz, R., Reynolds, A. E., and Wright, A. (1982) Cell 31, 43-51 14. Drolet, M., Bi, X., and Liu, L. F. (1994) The Journal of biological chemistry 269, 2068-2074 15. Ellis, J. G. t., Davila, M., and Chakrabarti, R. (2003) The Journal of biological chemistry 278, 1936-1945 16. Forterre, P., Gribaldo, S., Gadelle, D., and Serre, M. C. (2007) Biochimie 89, 427-446 17. Gerwig, G. J., van Kuik, J. A., Leeflang, B. R., Kamerling, J. P., Vliegenthart, J. F., Karr, C. D., and Jarroll, E. L. (2002) Glycobiology 12, 499-505 18. Gillin, F. D., Reiner, D. S., Gault, M. J., Douglas, H., Das, S., Wunderlich, A., and Sauch, J. F. (1987) Science 235, 1040-1043 19. Harmon, F. G., DiGate, R. J., and Kowalczykowski, S. C. (1999) Molecular cell 3, 611-620 20. Hashimoto, T., Nakamura, Y., Kamaishi, T., Nakamura, F., Adachi, J., Okamoto, K., and Hasegawa, M. (1995) Molecular biology and evolution 12, 782-793 21. Hiasa, H., DiGate, R. J., and Marians, K. J. (1994) The Journal of biological chemistry 269, 2093-2099 22. Hilario, E., and Gogarten, J. P. (1998) Journal of molecular evolution 46, 703-715 23. Huang, Y. C., Su, L. H., Lee, G. A., Chiu, P. W., Cho, C. C., Wu, J. Y., and Sun, C. H. (2008) The Journal of biological chemistry 283, 31021-31029 24. Ira, G., Malkova, A., Liberi, G., Foiani, M., and Haber, J. E. (2003) Cell 115, 401-411 25. Jarroll, E. L., Macechko, P. T., Steimle, P. A., Bulik, D., Karr, C. D., van Keulen, H., Paget, T. A., Gerwig, G., Kamerling, J., Vliegenthart, J., and Erlandsen, S. (2001) The Journal of eukaryotic microbiology 48, 22-26 26. Kim, K. T., Mok, M. T., and Edwards, M. R. (2005) Biochemical and biophysical research communications 334, 333-341 27. Kwan, K. Y., Moens, P. B., and Wang, J. C. (2003) Proceedings of the National Academy of Sciences of the United States of America 100, 2526-2531 28. Kwan, K. Y., and Wang, J. C. (2001) Proceedings of the National Academy of Sciences of the United States of America 98, 5717-5721 29. Lane, S., and Lloyd, D. (2002) Critical reviews in microbiology 28, 123-147 30. Lauwaet, T., Davids, B. J., Torres-Escobar, A., Birkeland, S. R., Cipriano, M. J., Preheim, S. P., Palm, D., Svard, S. G., McArthur, A. G., and Gillin, F. D. (2007) Molecular and biochemical parasitology 152, 80-89 31. Leipe, D. D., Gunderson, J. H., Nerad, T. A., and Sogin, M. L. (1993) Molecular and biochemical parasitology 59, 41-48 32. Li, W., and Wang, J. C. (1998) Proceedings of the National Academy of Sciences of the United States of America 95, 1010-1013 33. Lima, C. D., Wang, J. C., and Mondragon, A. (1994) Nature 367, 138-146 34. Liu, L. F., and Wang, J. C. (1987) Proceedings of the National Academy of Sciences of the United States of America 84, 7024-7027 35. Lujan, H. D., Mowatt, M. R., Byrd, L. G., and Nash, T. E. (1996) Proceedings of the National Academy of Sciences of the United States of America 93, 7628-7633 36. Lujan, H. D., Mowatt, M. R., Conrad, J. T., Bowers, B., and Nash, T. E. (1995) The Journal of biological chemistry 270, 29307-29313 37. Lujan, H. D., Mowatt, M. R., and Nash, T. E. (1997) Microbiology and molecular biology reviews : MMBR 61, 294-304 38. Manning, P., Erlandsen, S. L., and Jarroll, E. L. (1992) The Journal of protozoology 39, 290-296 39. Morf, L., Spycher, C., Rehrauer, H., Fournier, C. A., Morrison, H. G., and Hehl, A. B. (2010) Eukaryotic cell 9, 1566-1576 40. Mowatt, M. R., Lujan, H. D., Cotten, D. B., Bowers, B., Yee, J., Nash, T. E., and Stibbs, H. H. (1995) Molecular microbiology 15, 955-963 41. Nash, T. E. (2002) Molecular microbiology 45, 585-590 42. Oliveira-Costa, J. P., Zanetti, J., Oliveira, L. R., Soares, F. A., Ramalho, L. Z., Silva Ramalho, F., Garcia, S. B., and Ribeiro-Silva, A. (2010) Human pathology 41, 1624-1630 43. Palm, D., Weiland, M., McArthur, A. G., Winiecka-Krusnell, J., Cipriano, M. J., Birkeland, S. R., Pacocha, S. E., Davids, B., Gillin, F., Linder, E., and Svard, S. (2005) Molecular and biochemical parasitology 141, 199-207 44. Pan, Y. J., Cho, C. C., Kao, Y. Y., and Sun, C. H. (2009) The Journal of biological chemistry 284, 17975-17988 45. Pommier, Y., Leo, E., Zhang, H., and Marchand, C. (2010) Chemistry & biology 17, 421-433 46. Pruss, G. J., Manes, S. H., and Drlica, K. (1982) Cell 31, 35-42 47. Rao, S. T., and Rossmann, M. G. (1973) Journal of molecular biology 76, 241-256 48. Rybenkov, V. V., Ullsperger, C., Vologodskii, A. V., and Cozzarelli, N. R. (1997) Science 277, 690-693 49. Sogin, M. L., Gunderson, J. H., Elwood, H. J., Alonso, R. A., and Peattie, D. A. (1989) Science 243, 75-77 50. Su, L. H., Pan, Y. J., Huang, Y. C., Cho, C. C., Chen, C. W., Huang, S. W., Chuang, S. F., and Sun, C. H. (2011) The Journal of biological chemistry 286, 34101-34120 51. Sun, C. H., McCaffery, J. M., Reiner, D. S., and Gillin, F. D. (2003) The Journal of biological chemistry 278, 21701-21708 52. Sun, C. H., Palm, D., McArthur, A. G., Svard, S. G., and Gillin, F. D. (2002) Molecular microbiology 46, 971-984 53. Sun, C. H., Su, L. H., and Gillin, F. D. (2006) Molecular and biochemical parasitology 146, 45-57 54. Suski, C., and Marians, K. J. (2008) Molecular cell 30, 779-789 55. Tabary, X., Moreau, N., Dureuil, C., and Le Goffic, F. (1987) Antimicrobial agents and chemotherapy 31, 1925-1928 56. Touz, M. C., Ropolo, A. S., Rivero, M. R., Vranych, C. V., Conrad, J. T., Svard, S. G., and Nash, T. E. (2008) Journal of cell science 121, 2930-2938 57. Viard, T., and de la Tour, C. B. (2007) Biochimie 89, 456-467 58. Vos, S. M., Tretter, E. M., Schmidt, B. H., and Berger, J. M. (2011) Nature reviews. Molecular cell biology 12, 827-841 59. Wallis, J. W., Chrebet, G., Brodsky, G., Rolfe, M., and Rothstein, R. (1989) Cell 58, 409-419 60. Wang, C. H., Su, L. H., and Sun, C. H. (2007) The Journal of biological chemistry 282, 8905-8914 61. Wang, J. C. (1971) Journal of molecular biology 55, 523-533 62. Wang, J. C. (2002) Nature reviews. Molecular cell biology 3, 430-440 63. Wang, Y. T., Pan, Y. J., Cho, C. C., Lin, B. C., Su, L. H., Huang, Y. C., and Sun, C. H. (2010) The Journal of biological chemistry 285, 32213-32226 64. Wilson-Sali, T., and Hsieh, T. S. (2002) The Journal of biological chemistry 277, 26865-26871 65. Wu, L., and Hickson, I. D. (2003) Nature 426, 870-874 66. Zechiedrich, E. L., and Cozzarelli, N. R. (1995) Genes & development 9, 2859-2869 | |
| dc.identifier.uri | http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/17466 | - |
| dc.description.abstract | 梨形鞭毛蟲為一種常見的腸道單細胞寄生性原蟲,在其生活史中為了適應宿主體外惡劣的環境,囊體化的過程是必須的,此時期細胞會大量表現囊體壁的組成因子,囊體壁蛋白質 ( cyst wall protein, CWP ) 與多醣類,形成囊體以抵抗外界逆境,目前已知的囊體壁蛋白質有CWP1、CWP2、CWP3。在細胞進行囊體化的過程中染色體套數由4倍體的滋養體擴張為16倍體的囊體,且大量的基因活動參與其中,在這一個基因體高度變化的過程中,基因體的穩定性是相當重要的。先前的研究指出,type IA topoisomerases參與細胞DNA複製、染色體分離、轉錄作用、DNA重組、以及DNA修復等基因活動,我們分析梨形鞭毛蟲的一個type IA topoisomerase,topoisomerase III β ( gTOP3β )基因的啟動子,發現內含一個調控梨形鞭毛蟲囊體化的轉錄因子Myb2的結合序列,顯示梨形鞭毛蟲gTOP3β可能參與其囊體化的過程中。
本研究想了解,梨形鞭毛蟲gTOP3β在囊體化過程中所扮演的角色。我們由定量RT-PCR與西方點墨法分析得知囊體化時期梨形鞭毛蟲內生性gTOP3β基因 的表現量略高於滋養體時期。由免疫螢光染色法得知gTOP3β主要分佈於細胞核,核膜的位置。電泳位移分析實驗與DNA切割活性分析得知gTOP3β具有與囊體壁蛋白質基因啟動子結合及切割DNA的能力。由定量RT-PCR,西方點墨法與囊體計數得知,大量表現topoisomerase III β會增加囊體化相關基因cwp1-3以及myb2基因的表現及囊體形成的能力。然而當我們將topoisomerase III β的topoisomerase 活性區域中的酵素活性胺基酸Y328以及C端的Zinc ribbon區域進行突變後,發現酵素與DNA結合的能力與切割DNA的能力都受到了抑制,且降低梨形鞭毛蟲囊體化相關基因之表現與囊體的形成。經由免疫共沉澱的分析我們也發現了gTOP3β與調控梨形鞭毛蟲囊體化的轉錄因子Myb2和WRKY結合的現象。 我們的結果顯示,梨形鞭毛蟲gTOP3β會在囊體化時期大量表現,並與囊體化相關基因啟動子結合以活化其基因表現,進而促使梨形鞭毛蟲的囊體化。我們認為gTOP3β可能與調控囊體化的轉錄因子共同作用,藉由解除囊體壁基因表現時所產生的拓樸學障礙以利轉錄作用的進行。 | zh_TW |
| dc.description.abstract | Giardia lamblia is one of the most important protozoan parasites causing intestinal infections in humans. It differentiates into infective cysts for disease transmission. G. lamblia cysts can survive in hostile environments, such as fresh water and gastric acid, during infection as they have a protective wall composed of proteins and polysaccharides. Three known cyst wall proteins (CWPs) are highly synthesized in a concerted manner during differentiation into cysts (encystation). However, little is known of their gene regulation. During encystation, a trophozoite may differentiate into a cyst by dividing 2 nuclei and by replicating DNA, generating a cyst with 4 nuclei. The maintenance of genome stability and to resolve the topological problems of DNA might be a great event in G. lamblia encystation. DNA topoisomerases solve all the topological problems such as replication, chromosome segregation, transcription, recombination, and DNA repair. A putative topoisomerase IIIβ (gTOP3β) gene has been identified in the G. lamblia genome. Analysis of the 5’-flanking region of the gTOP3β gene, we found that a binding site of the encystation-induced transcription factor, Myb2, is present in the gTOP3β promoter region. This indicates that gTOP3β might play a role in G. lamblia encystation.
To understand whether gTOP3β is involved in Giardia encystation or not, we used quantitative RT-PCR and Western blots to detect the gTOP3β RNA and protein in G. lamblia cells. Data show that gTOP3β gene expression was up-regulated during the encystation stage. Immunofluorescence assay revealed that it was localized to nuclear envelope. Electrophoretic mobility shift assay and DNA cleavage assay indicate that, like other type IA topoisomerases, gTOP3β is able to bind to the cwp1-3 promoters and to cleave the single-stranded DNA. This suggests the gTOP3β might be involved in transcriptional activation of encystation genes in G. lamblia. To confirm this hypothesis we performed the overexpression and mutation analysis in a stable transfection system. We found that overexpression of gTOP3β induced the expression of cwp1–3 and myb2 genes, and cyst formation. Mutation analysis revealed that the catalytic important Tyr residue, the topoisomerase domain and the C-terminal zinc ribbon domain are important for gTOP3β function. We also performed co-immunoprecipitation assay found that the gTOP3β can interact with encystation-induced transcription activators, Myb2 and WRKY. Taken together, this study suggests that gTOP3β plays an important role in induction of the cwp genes, which are key to Giardia differentiation into cysts. | en |
| dc.description.provenance | Made available in DSpace on 2021-06-08T00:14:44Z (GMT). No. of bitstreams: 1 ntu-102-R00445205-1.pdf: 5348265 bytes, checksum: f620db83b5728d423c207de2ed0e7e3b (MD5) Previous issue date: 2013 | en |
| dc.description.tableofcontents | 口試委員審定書………………………………………………………i
誌謝………………ii 摘要…………………………………………………………………iii Abstract………………………………………………………………iv 目錄……………………………………………………………………vi 第一章 前言 1 1.1 梨形鞭毛蟲生活史與其囊體化的基因調控 1 1.2 DNA拓樸異構酶 2 1.3 Type IA DNA拓樸異構酶 3 1.4 研究動機 5 第二章 材料方法 6 2.1 梨形鞭毛蟲細胞株的培養 (G. lamblia Culture) 6 2.2 囊體計數 (Cyst Count) 6 2.3 轉殖質體的建構 (Plasmid Construction) 6 2.3.1 5’∆5N-pac 6 2.3.2 pPgTOP3β 6 2.3.3 pPgTOP3β m1 7 2.3.4 pPgTOP3β m2 7 2.3.5 pPgTOP3β m3 8 2.4 梨形鞭毛蟲的轉染與選殖 (Stable DNA Transfection and Selection) 8 2.5重組蛋白質的表現與純化 (Expression and Purification of Recombinant gTOP3β Protein) 9 2.5.1 重組gTOP3β以及突變gTOP3β蛋白質的表現載體建構 9 2.5.2 重組蛋白質的表現與純化 10 2.6 反轉錄聚合酶鏈式反應 (Semi-quantitative RT-PCR Analysis,RT-PCR) 10 2.7 即時定量反轉錄聚合酶鏈式反應 (Quantitative Real-Time PCR Analysis,Q-PCR) 12 2.8西方點墨法 (Western Blot Analysis) 與Coomassie Blue 染色 13 2.8.1 TCA蛋白質沉澱 (TCA protein precipitation) 13 2.8.2西方點墨法 (Western Blot Analysis) 13 2.8.3 Coomassie Blue 染色 13 2.9 免疫螢光染色 (Immunofluorescence Assay) 14 2.10 電泳位移實驗 (Electrophoretic Mobility Shift Assay,EMSA) 14 2.10.1 標定探針 (Probe Labeling) 14 2.10.2電泳位移實驗 (EMSA) 14 2.11 切割DNA活性分析 (DNA Cleavage Assays ) 15 2.11.1 單股DNA切割活性分析 15 2.11.2 負超螺旋 DNA切割活性分析 15 2.12 免疫共沉澱法 (Co-immunoprecipitation Assay) 15 第三章 實驗結果 16 3.1 鑑定梨形鞭毛蟲topoisomerase III β (gTOP3β) 基因 16 3.2 梨形鞭毛蟲囊體化時期可活化gTOP3β基因表現量 17 3.3 梨形鞭毛蟲gTOP3β蛋白質具有結合單股DNA與切割單股DNA之能力 17 3.4 梨形鞭毛蟲gTOP3β蛋白質具有切割負超螺旋DNA的能力 18 3.5 梨形鞭毛蟲gTOP3β蛋白質具有與囊體化相關基因啟動子結合之能力 19 3.6 梨形鞭毛蟲gTOP3β蛋白質可誘導囊體壁蛋白質CWP1,及囊體化相關轉錄因子的蛋白質表現 20 3.7 利用突變蛋白質來分析梨形鞭毛蟲gTOP3β蛋白質的活性區域 21 3.8 gTOP3β與囊體化轉錄因子,Myb2與WRKY的交互作用 23 第四章 討論 24 4.1 梨形鞭毛蟲gTOP3β蛋白質功能區域分析 24 4.2梨形鞭毛蟲gTOP3β蛋白質的表現位置 25 4.3 梨形鞭毛蟲gTOP3β蛋白質偏好結合AT-rich序列 25 4.4 梨形鞭毛蟲gTOP3β蛋白質與囊體化轉錄因子,Myb2與WRKY的交互作用 26 4.5 梨形鞭毛蟲gTOP3β基因的啟動子區域存在有調控囊體化的轉錄因子結合位 27 附圖 28 附表 63 參考文獻 65 | |
| dc.language.iso | zh-TW | |
| dc.title | 梨形鞭毛蟲拓樸異構酶IIIβ在囊體化過程中所扮演的角色 | zh_TW |
| dc.title | The Role of Topoisomerase IIIβ (TOP3β) in Giardia lamblia Encystation | en |
| dc.type | Thesis | |
| dc.date.schoolyear | 101-2 | |
| dc.description.degree | 碩士 | |
| dc.contributor.oralexamcommittee | 李財坤(Tsai-Kun Li),詹迺立(Nei-Li Chan) | |
| dc.subject.keyword | 梨形鞭毛蟲,囊體化,type IA topoisomerases,topoisomerases,Cyst wall protein 1 (Cwp1),Myb,轉錄因子,轉錄作用, | zh_TW |
| dc.subject.keyword | Giardia lamblia,Encystation,type IA topoisomerases,topoisomerases,Cyst wall protein 1 (Cwp1),Myb,transcription factors,transcription, | en |
| dc.relation.page | 68 | |
| dc.rights.note | 未授權 | |
| dc.date.accepted | 2013-07-31 | |
| dc.contributor.author-college | 醫學院 | zh_TW |
| dc.contributor.author-dept | 微生物學研究所 | zh_TW |
| 顯示於系所單位: | 微生物學科所 | |
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