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  2. 醫學院
  3. 微生物學科所
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/17466
完整後設資料紀錄
DC 欄位值語言
dc.contributor.advisor孫錦虹(Chin-Hung Sun)
dc.contributor.authorShih-Che Wengen
dc.contributor.author翁仕哲zh_TW
dc.date.accessioned2021-06-08T00:14:44Z-
dc.date.copyright2013-09-24
dc.date.issued2013
dc.date.submitted2013-07-31
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/17466-
dc.description.abstract梨形鞭毛蟲為一種常見的腸道單細胞寄生性原蟲,在其生活史中為了適應宿主體外惡劣的環境,囊體化的過程是必須的,此時期細胞會大量表現囊體壁的組成因子,囊體壁蛋白質 ( cyst wall protein, CWP ) 與多醣類,形成囊體以抵抗外界逆境,目前已知的囊體壁蛋白質有CWP1、CWP2、CWP3。在細胞進行囊體化的過程中染色體套數由4倍體的滋養體擴張為16倍體的囊體,且大量的基因活動參與其中,在這一個基因體高度變化的過程中,基因體的穩定性是相當重要的。先前的研究指出,type IA topoisomerases參與細胞DNA複製、染色體分離、轉錄作用、DNA重組、以及DNA修復等基因活動,我們分析梨形鞭毛蟲的一個type IA topoisomerase,topoisomerase III β ( gTOP3β )基因的啟動子,發現內含一個調控梨形鞭毛蟲囊體化的轉錄因子Myb2的結合序列,顯示梨形鞭毛蟲gTOP3β可能參與其囊體化的過程中。
本研究想了解,梨形鞭毛蟲gTOP3β在囊體化過程中所扮演的角色。我們由定量RT-PCR與西方點墨法分析得知囊體化時期梨形鞭毛蟲內生性gTOP3β基因 的表現量略高於滋養體時期。由免疫螢光染色法得知gTOP3β主要分佈於細胞核,核膜的位置。電泳位移分析實驗與DNA切割活性分析得知gTOP3β具有與囊體壁蛋白質基因啟動子結合及切割DNA的能力。由定量RT-PCR,西方點墨法與囊體計數得知,大量表現topoisomerase III β會增加囊體化相關基因cwp1-3以及myb2基因的表現及囊體形成的能力。然而當我們將topoisomerase III β的topoisomerase 活性區域中的酵素活性胺基酸Y328以及C端的Zinc ribbon區域進行突變後,發現酵素與DNA結合的能力與切割DNA的能力都受到了抑制,且降低梨形鞭毛蟲囊體化相關基因之表現與囊體的形成。經由免疫共沉澱的分析我們也發現了gTOP3β與調控梨形鞭毛蟲囊體化的轉錄因子Myb2和WRKY結合的現象。
我們的結果顯示,梨形鞭毛蟲gTOP3β會在囊體化時期大量表現,並與囊體化相關基因啟動子結合以活化其基因表現,進而促使梨形鞭毛蟲的囊體化。我們認為gTOP3β可能與調控囊體化的轉錄因子共同作用,藉由解除囊體壁基因表現時所產生的拓樸學障礙以利轉錄作用的進行。
zh_TW
dc.description.abstractGiardia lamblia is one of the most important protozoan parasites causing intestinal infections in humans. It differentiates into infective cysts for disease transmission. G. lamblia cysts can survive in hostile environments, such as fresh water and gastric acid, during infection as they have a protective wall composed of proteins and polysaccharides. Three known cyst wall proteins (CWPs) are highly synthesized in a concerted manner during differentiation into cysts (encystation). However, little is known of their gene regulation. During encystation, a trophozoite may differentiate into a cyst by dividing 2 nuclei and by replicating DNA, generating a cyst with 4 nuclei. The maintenance of genome stability and to resolve the topological problems of DNA might be a great event in G. lamblia encystation. DNA topoisomerases solve all the topological problems such as replication, chromosome segregation, transcription, recombination, and DNA repair. A putative topoisomerase IIIβ (gTOP3β) gene has been identified in the G. lamblia genome. Analysis of the 5’-flanking region of the gTOP3β gene, we found that a binding site of the encystation-induced transcription factor, Myb2, is present in the gTOP3β promoter region. This indicates that gTOP3β might play a role in G. lamblia encystation.
To understand whether gTOP3β is involved in Giardia encystation or not, we used quantitative RT-PCR and Western blots to detect the gTOP3β RNA and protein in G. lamblia cells. Data show that gTOP3β gene expression was up-regulated during the encystation stage. Immunofluorescence assay revealed that it was localized to nuclear envelope. Electrophoretic mobility shift assay and DNA cleavage assay indicate that, like other type IA topoisomerases, gTOP3β is able to bind to the cwp1-3 promoters and to cleave the single-stranded DNA. This suggests the gTOP3β might be involved in transcriptional activation of encystation genes in G. lamblia. To confirm this hypothesis we performed the overexpression and mutation analysis in a stable transfection system. We found that overexpression of gTOP3β induced the expression of cwp1–3 and myb2 genes, and cyst formation. Mutation analysis revealed that the catalytic important Tyr residue, the topoisomerase domain and the C-terminal zinc ribbon domain are important for gTOP3β function. We also performed co-immunoprecipitation assay found that the gTOP3β can interact with encystation-induced transcription activators, Myb2 and WRKY.
Taken together, this study suggests that gTOP3β plays an important role in induction of the cwp genes, which are key to Giardia differentiation into cysts.
en
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Previous issue date: 2013
en
dc.description.tableofcontents口試委員審定書………………………………………………………i
誌謝………………ii
摘要…………………………………………………………………iii
Abstract………………………………………………………………iv
目錄……………………………………………………………………vi
第一章 前言 1
1.1 梨形鞭毛蟲生活史與其囊體化的基因調控 1
1.2 DNA拓樸異構酶 2
1.3 Type IA DNA拓樸異構酶 3
1.4 研究動機 5
第二章 材料方法 6
2.1 梨形鞭毛蟲細胞株的培養 (G. lamblia Culture) 6
2.2 囊體計數 (Cyst Count) 6
2.3 轉殖質體的建構 (Plasmid Construction) 6
2.3.1 5’∆5N-pac 6
2.3.2 pPgTOP3β 6
2.3.3 pPgTOP3β m1 7
2.3.4 pPgTOP3β m2 7
2.3.5 pPgTOP3β m3 8
2.4 梨形鞭毛蟲的轉染與選殖 (Stable DNA Transfection and Selection) 8
2.5重組蛋白質的表現與純化 (Expression and Purification of Recombinant gTOP3β Protein) 9
2.5.1 重組gTOP3β以及突變gTOP3β蛋白質的表現載體建構 9
2.5.2 重組蛋白質的表現與純化 10
2.6 反轉錄聚合酶鏈式反應 (Semi-quantitative RT-PCR Analysis,RT-PCR) 10
2.7 即時定量反轉錄聚合酶鏈式反應 (Quantitative Real-Time PCR Analysis,Q-PCR) 12
2.8西方點墨法 (Western Blot Analysis) 與Coomassie Blue 染色 13
2.8.1 TCA蛋白質沉澱 (TCA protein precipitation) 13
2.8.2西方點墨法 (Western Blot Analysis) 13
2.8.3 Coomassie Blue 染色 13
2.9 免疫螢光染色 (Immunofluorescence Assay) 14
2.10 電泳位移實驗 (Electrophoretic Mobility Shift Assay,EMSA) 14
2.10.1 標定探針 (Probe Labeling) 14
2.10.2電泳位移實驗 (EMSA) 14
2.11 切割DNA活性分析 (DNA Cleavage Assays ) 15
2.11.1 單股DNA切割活性分析 15
2.11.2 負超螺旋 DNA切割活性分析 15
2.12 免疫共沉澱法 (Co-immunoprecipitation Assay) 15
第三章 實驗結果 16
3.1 鑑定梨形鞭毛蟲topoisomerase III β (gTOP3β) 基因 16
3.2 梨形鞭毛蟲囊體化時期可活化gTOP3β基因表現量 17
3.3 梨形鞭毛蟲gTOP3β蛋白質具有結合單股DNA與切割單股DNA之能力 17
3.4 梨形鞭毛蟲gTOP3β蛋白質具有切割負超螺旋DNA的能力 18
3.5 梨形鞭毛蟲gTOP3β蛋白質具有與囊體化相關基因啟動子結合之能力 19
3.6 梨形鞭毛蟲gTOP3β蛋白質可誘導囊體壁蛋白質CWP1,及囊體化相關轉錄因子的蛋白質表現 20
3.7 利用突變蛋白質來分析梨形鞭毛蟲gTOP3β蛋白質的活性區域 21
3.8 gTOP3β與囊體化轉錄因子,Myb2與WRKY的交互作用 23
第四章 討論 24
4.1 梨形鞭毛蟲gTOP3β蛋白質功能區域分析 24
4.2梨形鞭毛蟲gTOP3β蛋白質的表現位置 25
4.3 梨形鞭毛蟲gTOP3β蛋白質偏好結合AT-rich序列 25
4.4 梨形鞭毛蟲gTOP3β蛋白質與囊體化轉錄因子,Myb2與WRKY的交互作用 26
4.5 梨形鞭毛蟲gTOP3β基因的啟動子區域存在有調控囊體化的轉錄因子結合位 27
附圖 28
附表 63
參考文獻 65
dc.language.isozh-TW
dc.title梨形鞭毛蟲拓樸異構酶IIIβ在囊體化過程中所扮演的角色zh_TW
dc.titleThe Role of Topoisomerase IIIβ (TOP3β) in Giardia lamblia Encystationen
dc.typeThesis
dc.date.schoolyear101-2
dc.description.degree碩士
dc.contributor.oralexamcommittee李財坤(Tsai-Kun Li),詹迺立(Nei-Li Chan)
dc.subject.keyword梨形鞭毛蟲,囊體化,type IA topoisomerases,topoisomerases,Cyst wall protein 1 (Cwp1),Myb,轉錄因子,轉錄作用,zh_TW
dc.subject.keywordGiardia lamblia,Encystation,type IA topoisomerases,topoisomerases,Cyst wall protein 1 (Cwp1),Myb,transcription factors,transcription,en
dc.relation.page68
dc.rights.note未授權
dc.date.accepted2013-07-31
dc.contributor.author-college醫學院zh_TW
dc.contributor.author-dept微生物學研究所zh_TW
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