請用此 Handle URI 來引用此文件:
http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/1288
完整後設資料紀錄
DC 欄位 | 值 | 語言 |
---|---|---|
dc.contributor.advisor | 胡凱康 | |
dc.contributor.author | Ching-Yu Shih | en |
dc.contributor.author | 石瀞予 | zh_TW |
dc.date.accessioned | 2021-05-12T09:35:35Z | - |
dc.date.available | 2018-03-01 | |
dc.date.available | 2021-05-12T09:35:35Z | - |
dc.date.copyright | 2018-03-01 | |
dc.date.issued | 2018 | |
dc.date.submitted | 2018-02-08 | |
dc.identifier.citation | 曾馨儀. 2010. 秈稉稻雜交BC1F1與F2族群之不平衡分離。碩士論文,國立台灣大學,台北市
王群山. 2010. 控制水稻榖粒長、榖粒寬、抽穗期、株高與穗長之數量性狀基因座的遺傳定位。碩士論文,國立台灣大學,台北市 蘇家玄. 2010. 多環境下水稻抽穗期與株高之數量性狀基因座定位。碩士論文,國立台灣大學,台北市 顏維萱. 2015. 水稻抽穗期基因在台灣自然日照環境下之效應。碩士論文,國立台灣大學,台北市 Arbelaez, J.D., L.T. Moreno, N. Singh, C.-W. Tung, L.G. Maron, Y. Ospina, C.P. Martinez, C. Grenier, M. Lorieux, and S. McCouch. 2015. Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Mol. Breed. 35(2): 81. Baird, N.A., P.D. Etter, T.S. Atwood, M.C. Currey, A.L. Shiver, Z.A. Lewis, E.U. Selker, W.A. Cresko, and E.A. Johnson. 2008. Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers. Plos One 3(10): e3376. Barchi, L., S. Lanteri, E. Portis, A. Acquadro, G. Valè, L. Toppino, and G.L. Rotino. 2011. Identification of SNP and SSR markers in eggplant using RAD tag sequencing. BMC Genomics 12(1): 304. Barchi, L., S. Lanteri, E. Portis, G. Valè, A. Volante, L. Pulcini, T. Ciriaci, N. Acciarri, V. Barbierato, L. Toppino, and G.L. Rotino. 2012. A RAD Tag Derived Marker Based Eggplant Linkage Map and the Location of QTLs Determining Anthocyanin Pigmentation. PLOS ONE 7(8): e43740. Beissinger, T.M., C.N. Hirsch, R.S. Sekhon, J.M. Foerster, J.M. Johnson, G. Muttoni, B. Vaillancourt, C.R. Buell, S.M. Kaeppler, and N. de Leon. 2013. Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing. Genetics 193(4): 1073–1081. Bentley, A.R., E.F. Jensen, I.J. Mackay, H. Hönicka, M. Fladung, K. Hori, M. Yano, J.E. Mullet, I.P. Armstead, C. Hayes, D. Thorogood, A. Lovatt, R. Morris, N. Pullen, E. Mutasa-Göttgens, and J. Cockram. 2013. Flowering Time. p. 1–66. In Genomics and Breeding for Climate-Resilient Crops. Springer, Berlin, Heidelberg. Bian, X.F., X. Liu, Z.G. Zhao, L. Jiang, H. Gao, Y.H. Zhang, M. Zheng, L.M. Chen, S.J. Liu, H.Q. Zhai, and J.M. Wan. 2011. Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1. Plant Cell Rep. 30(12): 2243–2254. Bioconductor - VariantAnnotation. Available at https://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html (verified 5 October 2016). Celik, I., S. Bodur, A. Frary, and S. Doganlar. 2016. Genome-wide SNP discovery and genetic linkage map construction in sunflower (Helianthus annuus L.) using a genotyping by sequencing (GBS) approach. Mol. Breed. 36(9): 133. Chen, M.-H., C.J. Bergman, S.R.M. Pinson, and R.G. Fjellstrom. 2008. Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection. J. Cereal Sci. 48(3): 781–788. Chen, L., W. Gao, S. Chen, L. Wang, J. Zou, Y. Liu, H. Wang, Z. Chen, and T. Guo. 2016. High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice. Rice 9(1): 48. Chen, Z., B. Wang, X. Dong, H. Liu, L. Ren, J. Chen, A. Hauck, W. Song, and J. Lai. 2014. An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F2 maize population. BMC Genomics 15: 433. Cho, L.-H., J. Yoon, and G. An. 2017. The control of flowering time by environmental factors. Plant J. 90(4): 708–719. Choi, S.C., S. Lee, S.-R. Kim, Y.-S. Lee, C. Liu, X. Cao, and G. An. 2014. Trithorax Group Protein Oryza sativa Trithorax1 Controls Flowering Time in Rice via Interaction with Early heading date3. PLANT Physiol. 164(3): 1326–1337. Churchill, G.A., and R.W. Doerge. 1994. Empirical Threshold Values for Quantitative Trait Mapping. Chutimanitsakun, Y., R.W. Nipper, A. Cuesta-Marcos, L. Cistué, A. Corey, T. Filichkina, E.A. Johnson, and P.M. Hayes. 2011. Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics 12: 4. Dai, X., Y. Ding, L. Tan, Y. Fu, F. Liu, Z. Zhu, X. Sun, X. Sun, P. Gu, H. Cai, and C. Sun. 2012. LHD1,an Allele of DTH8 / Ghd8 , Controls Late Heading Date in Common Wild Rice (Oryza rufipogon ). J. Integr. Plant Biol. 54(10): 790–799. Darvasi, A., and M. Soller. 1997. A simple method to calculate resolving power and confidence interval of QTL map location. Behav. Genet. 27(2): 125–132. Darvasi, A., A. Weinreb, V. Minke, J.I. Weller, and M. Soller. 1993. Detecting marker-QTL linkage and estimating QTL gene effect and map location using a saturated genetic map. Genetics 134(3): 943–951. Davik, J., D.J. Sargent, M.B. Brurberg, S. Lien, M. Kent, and M. Alsheikh. 2015. A ddRAD Based Linkage Map of the Cultivated Strawberry, Fragaria xananassa. PLOS ONE 10(9): e0137746. De Leon, T.B., S. Linscombe, and P.K. Subudhi. 2016. Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map. Rice 9: 52. Doi, K., T. Izawa, T. Fuse, U. Yamanouchi, T. Kubo, Z. Shimatani, M. Yano, and A. Yoshimura. 2004. Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev. 18(8): 926–936. Du, A., W. Tian, M. Wei, W. Yan, H. He, D. Zhou, X. Huang, S. Li, and X. Ouyang. 2017. The DTH8-Hd1 Module Mediates Day-Length-Dependent Regulation of Rice Flowering. Mol. Plant 10(7): 948–961. Duan, M., Z. Sun, L. Shu, Y. Tan, D. Yu, X. Sun, R. Liu, Y. Li, S. Gong, and D. Yuan. 2013. Genetic analysis of an elite super-hybrid rice parent using high-density SNP markers. Rice 6(1): 21. Elshire, R.J., J.C. Glaubitz, Q. Sun, J.A. Poland, K. Kawamoto, E.S. Buckler, and S.E. Mitchell. 2011. A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species. Plos One 6(5): e19379. Feltus, F.A., J. Wan, S.R. Schulze, J.C. Estill, N. Jiang, and A.H. Paterson. 2004. An SNP Resource for Rice Genetics and Breeding Based on Subspecies Indica and Japonica Genome Alignments. Genome Res. 14(9): 1812–1819. Furuta, T., M. Ashikari, K.K. Jena, K. Doi, and S. Reuscher. 2017. Adapting Genotyping-by-Sequencing for Rice F2 Populations. G3 Genes Genomes Genet. 7(3): 881–893. Gao, H., X.-M. Zheng, G. Fei, J. Chen, M. Jin, Y. Ren, W. Wu, K. Zhou, P. Sheng, F. Zhou, L. Jiang, J. Wang, X. Zhang, X. Guo, J.-L. Wang, Z. Cheng, C. Wu, H. Wang, and J.-M. Wan. 2013. Ehd4 Encodes a Novel and Oryza-Genus-Specific Regulator of Photoperiodic Flowering in Rice. Plos Genet. 9(2): e1003281. Haley, C.S., and S.A. Knott. 1992. A Simple Regression Method for Mapping Quantitative Trait Loci in Line Crosses Using Flanking Markers. Heredity 69: 315–324. Han, Z., W. Hu, C. Tan, and Y. Xing. 2017. QTLs for heading date and plant height under multiple environments in rice. Genetica 145(1): 67–77. Hayama, R., S. Yokoi, S. Tamaki, M. Yano, and K. Shimamoto. 2003. Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature 422(6933): 719–722. Hori, K., K. Matsubara, and M. Yano. 2016. Genetic control of flowering time in rice: integration of Mendelian genetics and genomics. Theor. Appl. Genet. 129(12): 2241–2252. Hori, K., E. Ogiso-Tanaka, K. Matsubara, U. Yamanouchi, K. Ebana, and M. Yano. 2013. Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response. Plant J. 76(1): 36–46. Huang, X., X. Wei, T. Sang, Q. Zhao, Q. Feng, Y. Zhao, C. Li, C. Zhu, T. Lu, Z. Zhang, M. Li, D. Fan, Y. Guo, A. Wang, L. Wang, L. Deng, W. Li, Y. Lu, Q. Weng, K. Liu, T. Huang, T. Zhou, Y. Jing, W. Li, Z. Lin, E.S. Buckler, Q. Qian, Q.-F. Zhang, J. Li, and B. Han. 2010. Genome-wide association studies of 14 agronomic traits in rice landraces. Nat. Genet. 42(11): 961–967. Itoh, H., Y. Nonoue, M. Yano, and T. Izawa. 2010. A pair of floral regulators sets critical day length for Hd3a florigen expression in rice. Nat. Genet. 42(7): 635–638. Izawa, T. 2007a. Daylength Measurements by Rice Plants in Photoperiodic Short‐Day Flowering. p. 191–222. In Cytology, B.-I.R. of (ed.), Academic Press. Izawa, T. 2007b. Adaptation of flowering-time by natural and artificial selection in Arabidopsis and rice. J. Exp. Bot. 58(12): 3091–3097. Izawa, T., T. Oikawa, N. Sugiyama, T. Tanisaka, M. Yano, and K. Shimamoto. 2002. Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Genes Dev. 16(15): 2006–2020. Jung, C., and A.E. Müller. 2009. Flowering time control and applications in plant breeding. Trends Plant Sci. 14(10): 563–573. Kao, C.-H., Z.-B. Zeng, and R.D. Teasdale. 1999. Multiple interval mapping for quantitative trait loci. Genetics 152(3): 1203–1216. Kim, S.L., S. Lee, H.J. Kim, H.G. Nam, and G. An. 2007. OsMADS51 Is a Short-Day Flowering Promoter That Functions Upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol. 145(4): 1484–1494. Kim, S.-I., and T.H. Tai. 2013. High resolution genotyping by restriction enzyme-phased sequencing of advanced backcross lines of rice exhibiting differential cold stress recovery. Euphytica 192(1): 107–115. Kojima, S., Y. Takahashi, Y. Kobayashi, L. Monna, T. Sasaki, T. Araki, and M. Yano. 2002. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol. 43(10): 1096–1105. Komiya, R., A. Ikegami, S. Tamaki, S. Yokoi, and K. Shimamoto. 2008. Hd3a and RFT1 are essential for flowering in rice. Development 135(4): 767–774. Komiya, R., S. Yokoi, and K. Shimamoto. 2009. A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice. Development 136(20): 3443–3450. Koo, B.-H., S.-C. Yoo, J.-W. Park, C.-T. Kwon, B.-D. Lee, G. An, Z. Zhang, J. Li, Z. Li, and N.-C. Paek. 2013. Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes. Mol. Plant 6(6): 1877–1888. Kosambi, D.D. 1943. The Estimation of Map Distances from Recombination Values. Ann. Eugen. 12(1): 172–175. Langmead, B., and S.L. Salzberg. 2012. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9(4): 357–359. Lee, Y.-S., and G. An. 2015. Regulation of flowering time in rice. J. Plant Biol. 58(6): 353–360. Lee, Y.-S., D.-H. Jeong, D.-Y. Lee, J. Yi, C.-H. Ryu, S.L. Kim, H.J. Jeong, S.C. Choi, P. Jin, J. Yang, L.-H. Cho, H. Choi, and G. An. 2010. OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB. Plant J. 63(1): 18–30. Leon, T.B.D., S. Linscombe, and P.K. Subudhi. 2016. Molecular Dissection of Seedling Salinity Tolerance in Rice ( Oryza sativa L .) Using a High-Density GBS-Based SNP Linkage Map. Rice 9(1): 52. Lim, J., Y.-H. Moon, G. An, and S.K. Jang. 2000. Two rice MADS domain proteins interact with OsMADS1. Plant Mol. Biol. 44(4): 513–527. Lin, H., M. Ashikari, U. Yamanouchi, T. Sasaki, and M. Yano. 2002. Identification and Characterization of a Quantitative Trait Locus, Hd9, Controlling Heading Date in Rice. Breeding Science 52, 35-41. Lin, H.X., T. Yamamoto, T. Sasaki, and M. Yano. 2000. Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines. Theor. Appl. Genet. 101(7): 1021–1028. Liu, Y., X. Qi, N.D. Young, K.M. Olsen, A.L. Caicedo, and Y. Jia. 2015. Characterization of resistance genes to rice blast fungus Magnaporthe oryzae in a “Green Revolution” rice variety. Mol. Breed. 35(1): 52. Matsubara, K., U. Yamanouchi, Y. Nonoue, K. Sugimoto, Z.-X. Wang, Y. Minobe, and M. Yano. 2011. Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering. Plant J. 66(4): 603–612. Matsubara, K., U. Yamanouchi, Z.-X. Wang, Y. Minobe, T. Izawa, and M. Yano. 2008. Ehd2, a Rice Ortholog of the Maize INDETERMINATE1 Gene, Promotes Flowering by Up-Regulating Ehd1. Plant Physiol. 148(3): 1425–1435. McCormack, J.E., S.M. Hird, A.J. Zellmer, B.C. Carstens, and R.T. Brumfield. 2013. Applications of next-generation sequencing to phylogeography and phylogenetics. Mol. Phylogenet. Evol. 66(2): 526–538. McKenna, A., M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, and M.A. DePristo. 2010. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20(9): 1297–1303. Morgan, M., S. Anders, M. Lawrence, P. Aboyoun, H. Pagès, and R. Gentleman. 2009. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics 25(19): 2607–2608. Nemoto, Y., Y. Nonoue, M. Yano, and T. Izawa. 2016. Hd1,a CONSTANS ortholog in rice, functions as an Ehd1 repressor through interaction with monocot-specific CCT-domain protein Ghd7. Plant J. 86(3): 221–233. Ogiso, E., Y. Takahashi, T. Sasaki, M. Yano, and T. Izawa. 2010. The Role of Casein Kinase II in Flowering Time Regulation Has Diversified during Evolution. Plant Physiol. 152(2): 808–820. Peng, L.-T., Z.-Y. Shi, L. Li, G.-Z. Shen, and J.-L. Zhang. 2008. Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa. J. Plant Physiol. 165(8): 876–885. Peterson, B.K., J.N. Weber, E.H. Kay, H.S. Fisher, and H.E. Hoekstra. 2012. Double Digest RADseq: An inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS ONE 7(5): e37135. Poland, J.A., P.J. Brown, M.E. Sorrells, and J.-L. Jannink. 2012a. Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach. Plos One 7(2): e32253. Poland, J., J. Endelman, J. Dawson, J. Rutkoski, S.Y. Wu, Y. Manes, S. Dreisigacker, J. Crossa, H. Sanchez-Villeda, M. Sorrells, and J.L. Jannink. 2012b. Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing. Plant Genome 5: 103–113. Purwestri, Y.A., Y. Ogaki, S. Tamaki, H. Tsuji, and K. Shimamoto. 2009. The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a. Plant Cell Physiol.: pcp012. Ryu, C.-H., S. Lee, L.-H. Cho, S.L. Kim, Y.-S. Lee, S.C. Choi, H.J. Jeong, J. Yi, S.J. Park, C.-D. Han, and G. An. 2009. OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice. Plant Cell Environ. 32(10): 1412–1427. Saito, H., Q. Yuan, Y. Okumoto, K. Doi, A. Yoshimura, H. Inoue, M. Teraishi, T. Tsukiyama, and T. Tanisaka. 2009. Multiple alleles at Early flowering 1 locus making variation in the basic vegetative growth period in rice (Oryza sativa L.). Theor. Appl. Genet. 119(2): 315–323. Scaglione, D., A. Acquadro, E. Portis, M. Tirone, S.J. Knapp, and S. Lanteri. 2012. RAD tag sequencing as a source of SNP markers in Cynara cardunculus L. BMC Genomics 13: 3. Scaglione, D., A. Fornasiero, C. Pinto, F. Cattonaro, A. Spadotto, R. Infante, C. Meneses, R. Messina, O. Lain, G. Cipriani, and R. Testolin. 2015. A RAD-based linkage map of kiwifruit (Actinidia chinensis Pl.) as a tool to improve the genome assembly and to scan the genomic region of the gender determinant for the marker-assisted breeding. Tree Genet. Genomes 11(6): 115. Schuetzenmeister, A. 2016. VCA: Variance Component Analysis. Shibaya, T., K. Hori, E. Ogiso-Tanaka, U. Yamanouchi, K. Shu, N. Kitazawa, A. Shomura, T. Ando, K. Ebana, J. Wu, T. Yamazaki, and M. Yano. 2016. Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol. 57(9): 1828–1838. Spindel, J., M. Wright, C. Chen, J. Cobb, J. Gage, S. Harrington, M. Lorieux, N. Ahmadi, and S. McCouch. 2013. Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor. Appl. Genet. 126(11): 2699–2716. Takahashi, Y., A. Shomura, T. Sasaki, and M. Yano. 2001. Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2. Proc. Natl. Acad. Sci. 98(14): 7922–7927. Tamaki, S., S. Matsuo, H.L. Wong, S. Yokoi, and K. Shimamoto. 2007. Hd3a Protein Is a Mobile Flowering Signal in Rice. Science 316(5827): 1033–1036. Tan, J., M. Jin, J. Wang, F. Wu, P. Sheng, Z. Cheng, J. Wang, X. Zheng, L. Chen, M. Wang, S. Zhu, X. Guo, X. Zhang, X. Liu, C. Wang, H. Wang, C. Wu, and J. Wan. 2016. OsCOL10 , a CONSTANS-Like Gene, Functions as a Flowering Time Repressor Downstream of Ghd7 in Rice. Plant Cell Physiol. 57(4): 798–812. Tsuji, H., S. Tamaki, R. Komiya, and K. Shimamoto. 2008. Florigen and the Photoperiodic Control of Flowering in Rice. Rice 1(1): 25–35. Uncu, A.O., A. Frary, P. Karlovsky, and S. Doganlar. 2016. High-throughput single nucleotide polymorphism (SNP) identification and mapping in the sesame (Sesamum indicum L.) genome with genotyping by sequencing (GBS) analysis. Mol. Breed. 36(12): 173. Vergara, B.S., and T.T. Chang. 1985. The flowering response of the rice plant to photoperiod: a review of the literature. International Rice Research Institute, Los Baños, Philippines. Wei, X., J. Xu, H. Guo, L. Jiang, S. Chen, C. Yu, Z. Zhou, P. Hu, H. Zhai, and J. Wan. 2010. DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously. PLANT Physiol. 153(4): 1747–1758. Wu, D.-H., H.-P. Wu, C.-S. Wang, H.-Y. Tseng, and K.-K. Hwu. 2013a. Genome-wide InDel marker system for application in rice breeding and mapping studies. Euphytica 192(1): 131–143. Wu, W., X.-M. Zheng, D. Chen, Y. Zhang, W. Ma, H. Zhang, L. Sun, Z. Yang, C. Zhao, X. Zhan, X. Shen, P. Yu, Y. Fu, S. Zhu, L. Cao, and S. Cheng. 2017. OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice. Plant Sci. 260: 60–69. Wu, W., X.-M. Zheng, G. Lu, Z. Zhong, H. Gao, L. Chen, C. Wu, H.-J. Wang, Q. Wang, K. Zhou, J.-L. Wang, F. Wu, X. Zhang, X. Guo, Z. Cheng, C. Lei, Q. Lin, L. Jiang, H. Wang, S. Ge, and J. Wan. 2013b. Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia. Proc. Natl. Acad. Sci. 110(8): 2775–2780. Xu, F., X. Sun, Y. Chen, Y. Huang, C. Tong, and J. Bao. 2015. Rapid Identification of Major QTLs Associated with Rice Grain Weight and Their Utilization. PLOS ONE 10(3): e0122206. Xue, W., Y. Xing, X. Weng, Y. Zhao, W. Tang, L. Wang, H. Zhou, S. Yu, C. Xu, X. Li, and Q. Zhang. 2008. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40(6): 761–767. Yagi, M., K. Shirasawa, T. Waki, T. Kume, S. Isobe, K. Tanase, and H. Yamaguchi. 2017. Construction of an SSR and RAD Marker-Based Genetic Linkage Map for Carnation (Dianthus caryophyllus L.). Plant Mol. Biol. Report. 35(1): 110–117. Yan, W.-H., P. Wang, H.-X. Chen, H.-J. Zhou, Q.-P. Li, C.-R. Wang, Z.-H. Ding, Y.-S. Zhang, S.-B. Yu, Y.-Z. Xing, and Q.-F. Zhang. 2011. A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice. Mol. Plant 4(2): 319–330. Yang, H., J. Jian, X. Li, D. Renshaw, J. Clements, M.W. Sweetingham, C. Tan, and C. Li. 2015. Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius). BMC Genomics 16: 660. Yang, Y., Q. Peng, G.-X. Chen, X.-H. Li, and C.-Y. Wu. 2013. OsELF3 Is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice. Mol. Plant 6(1): 202–215. Yano, M., Y. Harushima, Y. Nagamura, N. Kurata, Y. Minobe, and T. Sasaki. 1997. Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map. Theor. Appl. Genet. 95(7): 1025–1032. Yano, M., Y. Katayose, M. Ashikari, U. Yamanouchi, L. Monna, T. Fuse, T. Baba, K. Yamamoto, Y. Umehara, and Y. Nagamura. 2000. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell Online 12(12): 2473–2483. Yokoo, T., H. Saito, Y. Yoshitake, Q. Xu, T. Asami, T. Tsukiyama, M. Teraishi, Y. Okumoto, and T. Tanisaka. 2014. Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1 (H Sassa, Ed.). PLoS ONE 9(4): e96064. Yoshida, S. 1981. Fundamentals of rice crop science. Int. Rice Res. Inst. Yoshitake, Y., T. Yokoo, H. Saito, T. Tsukiyama, X. Quan, K. Zikihara, H. Katsura, S. Tokutomi, T. Aboshi, N. Mori, H. Inoue, H. Nishida, T. Kohchi, M. Teraishi, Y. Okumoto, and T. Tanisaka. 2015. The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice. Sci. Rep. 5: srep07709. You, F.M., N. Huo, Y.Q. Gu, M. Luo, Y. Ma, D. Hane, G.R. Lazo, J. Dvorak, and O.D. Anderson. 2008. BatchPrimer3: A high throughput web application for PCR and sequencing primer design. BMC Bioinformatics 9(1): 253. Yu, H., W. Xie, J. Wang, Y. Xing, C. Xu, X. Li, J. Xiao, and Q. Zhang. 2011. Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers. PLOS ONE 6(3): e17595. Zhang, B., W. Ye, D. Ren, P. Tian, Y. Peng, Y. Gao, B. Ruan, L. Wang, G. Zhang, L. Guo, Q. Qian, and Z. Gao. 2015a. Genetic analysis of flag leaf size and candidate genes determination of a major QTL for flag leaf width in rice. Rice 8(1): 2. Zhang, J., X. Zhou, W. Yan, Z. Zhang, L. Lu, Z. Han, H. Zhao, H. Liu, P. Song, Y. Hu, G. Shen, Q. He, S. Guo, G. Gao, G. Wang, and Y. Xing. 2015b. Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice. New Phytol. 208(4): 1056–1066. Zhao, J., H. Chen, D. Ren, H. Tang, R. Qiu, J. Feng, Y. Long, B. Niu, D. Chen, T. Zhong, Y.-G. Liu, and J. Guo. 2015. Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and Heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa). New Phytol. 208(3): 936–948. Zheng, X.-M., L. Feng, J. Wang, W. Qiao, L. Zhang, Y. Cheng, and Q. Yang. 2016. Nonfunctional alleles of long-day suppressor genes independently regulate flowering time. J. Integr. Plant Biol. 58(6): 540–548. Zhou, X., Y. Xia, X. Ren, Y. Chen, L. Huang, S. Huang, B. Liao, Y. Lei, L. Yan, and H. Jiang. 2014. Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq). BMC Genomics 15: 351. | |
dc.identifier.uri | http://tdr.lib.ntu.edu.tw/handle/123456789/1288 | - |
dc.description.abstract | 水稻的抽穗日數為影響產量的重要農藝性狀之一,不同品種因地理環境與栽培期作培育出最合適的抽穗日數以達到最佳產量。抽穗日數由多個效應不同的基因控制,有些基因與環境因子如日長及溫度具有交感效應。本試驗利用台稉2號與台中秈10號的雜交後RILs,評估兩個播種期與四個功能性分子標誌Ehd1、Ehd4、Ghd7與Dth8基因與環境之間的交感作用,亦建構連鎖圖譜偵測在此族群中是否存在其他控制抽穗日數的QTL。
分別對兩個播種期做多重迴歸分析,其中Ehd1、Ehd4與Dth8顯著影響兩個播種期抽穗日數的變異,Ghd7只在較早播種期下顯著表現。在較早播種期下Ehd1:Ghd7:Dth8與較晚播種期下Ehd1:Dth8基因間交感統計上顯著。將兩個播種期與合併的多重迴歸分析中,播種期為影響抽穗日數變異最大的因子,其外表型解釋變異為54.46%,除了在兩個播種期分別做多重迴歸分析結果得到的基因與基因交感效應,Ehd4和Ghd7與播種期之間具有交感效應。QTL分析與多重迴歸分析結果差異不大,除了51.52 cM上的Ghd7外,在78 cM上多偵測到qHD7,推測此區間可能含有一個以上的基因,需要進一步利用染色體片段置換系驗證此觀察結果。在不同環境下評估基因表現有利於後續分子標誌輔助選種之應用,穩定表現的基因適用於廣泛區域的育種,與環境間具有交感的基因則可應用在特定地區品種之培育。 | zh_TW |
dc.description.abstract | Heading days is one of the important agronomic traits for seed production in rice. Rice cultivars have been bred to adapt to various environments and cropping systems in terms of optimum flowering time to maximize the grain yield. Heading days in rice is controlled by multiple quantitative genes, and some of these genes may have effects that interact with environmental factors such as photoperiod and temperature. In this study, we evaluated the heading days of a RILs population derived from a cross between Taiken 2 and Taichung Sen 10 under two sawing dates, and genotypes of four previously found heading days controlling genes Ehd1, Ehd4, Ghd7, and Dth8 via functional markers to evaluate the interaction between genes and environments. We also constructed a genetic linkage map for this population to determine if there are other QTLs controlling heading days.
When analyzed separately, the results of multiple regression analysis showed that Ehd1, Ehd4 and Dth8 significantly affected heading days in both environments, while the effect of Ghd7 was only statistically significant in the early sawing date. Genetic interactions of Ehd1:Ghd7:Dth8 and Ehd1:Dth8 were statistically significant in the early and late sawing date, respectively. When the heading days under both sawing dates were combined, the results of multiple regression analysis indicated the sawing date is the largest contributor to the phenotypic variance (54.46%). Besides the genetic effects and interactions found in the separated analysis, Ehd4 and Ghd7 were found interacting with sawing dates. The result of QTL analysis was largely consistent with the multiple regression analysis except that gHD7 position at 78.00 cM of chromosome 7 was mapped instead of the Ghd7 located at 51.52 cM, suggesting that there may be more than one genes at chromosome 7 controlling heading days. Further study using chromosome segment substitution lines may be needed to verify this supposition. Evaluating genetic effects in different environments can contribute to marker assisted selection. Steadily detected genes can be used in general environments; however, genes having interactions with environments could be used for varieties developed for a certain sawing date. | en |
dc.description.provenance | Made available in DSpace on 2021-05-12T09:35:35Z (GMT). No. of bitstreams: 1 ntu-107-R04621120-1.pdf: 2421483 bytes, checksum: f761bee5945686e337346660e17fec40 (MD5) Previous issue date: 2018 | en |
dc.description.tableofcontents | 中文摘要 i
Abstract ii 目錄 iv 圖目錄 vi 表目錄 vii 對照表 1 第一章 前言 3 第二章 前人研究 5 第一節 抽穗期相關研究 5 第二節 次世代定序 13 第三章 材料與方法 16 第一節 遺傳材料及栽培環境 16 1. 遺傳材料及外表型調查 16 2. 栽培環境因子 16 第二節 功能性分子標誌之建立與多重迴歸分析 18 1. 以Taqman系統對Ghd7做基因型判別 18 2. Dth8基因定序及功能性分子標誌設計 19 3. 利用功能性分子標誌建立多重迴歸模型 20 第三節 文庫之製備流程及資料分析 21 1. 估計預期用於建構連鎖圖譜之分子標誌數量 21 2. Genomic DNA 萃取 21 3. 雙切酶切割 22 4. P1 adapter 及 Y adapter 連接酶反應 22 5. PCR 反應 23 6. 片段大小篩選 (Size selection) 23 第四節 序列比對及Variant calling 24 第五節 篩選建構連鎖圖譜的 SNP 24 第六節 連鎖圖譜建立及數量性狀基因座定位 25 1. 連鎖圖譜之建構 25 2. 數量基因座之定位 26 第四章 結果與討論 27 第一節 RILs的抽穗日數變異 27 第二節 多重迴歸分析結果 28 1. 兩個播種期個別的多重迴歸分析結果 28 2. 四個抽穗期基因對抽穗日數之影響 31 3. 合併兩個播種期的分析結果 35 第三節 連鎖圖譜建構 38 1. 連鎖圖譜建構與分析 38 2. 不平衡分離現象 44 第四節 QTL mapping 分析結果 47 1. 早播種期與晚播種期之遺傳定位 47 2. 早播種期定位到Ghd7鄰近的qHD7 50 3. 不同族群在不同環境下之遺傳定位比較 52 第五章 結論 55 參考文獻 56 附錄 67 | |
dc.language.iso | zh-TW | |
dc.title | 探討控制水稻抽穗日數基因與播種期之交感 | zh_TW |
dc.title | Interaction between Genes Controlling Days to Heading and sowing dates in Rice | en |
dc.type | Thesis | |
dc.date.schoolyear | 106-1 | |
dc.description.degree | 碩士 | |
dc.contributor.oralexamcommittee | 陳凱儀,劉力瑜 | |
dc.subject.keyword | 水稻,抽穗日數,多重迴歸分析,QTL定位, | zh_TW |
dc.subject.keyword | Oryza sativa L,Heading days,multiple regression,QTL mapping, | en |
dc.relation.page | 72 | |
dc.identifier.doi | 10.6342/NTU201800314 | |
dc.rights.note | 同意授權(全球公開) | |
dc.date.accepted | 2018-02-09 | |
dc.contributor.author-college | 生物資源暨農學院 | zh_TW |
dc.contributor.author-dept | 農藝學研究所 | zh_TW |
顯示於系所單位: | 農藝學系 |
文件中的檔案:
檔案 | 大小 | 格式 | |
---|---|---|---|
ntu-107-1.pdf | 2.36 MB | Adobe PDF | 檢視/開啟 |
系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。