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  1. NTU Theses and Dissertations Repository
  2. 生物資源暨農學院
  3. 生物機電工程學系
請用此 Handle URI 來引用此文件: http://tdr.lib.ntu.edu.tw/jspui/handle/123456789/104773
完整後設資料紀錄
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dc.contributor.advisor吳筱梅zh_TW
dc.contributor.advisorHsiao-Mei Wuen
dc.contributor.author林泓佑zh_TW
dc.contributor.authorHung-Yu Linen
dc.date.accessioned2026-09-02T16:06:23Z-
dc.date.available2026-09-03-
dc.date.copyright2026-09-02-
dc.date.issued2026-
dc.date.submitted2026-08-12 17:57:19-
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Otomo, K., Omura, T., Nozawa, Y., Edwards, S. J., Sato, Y., Saito, Y., Yagishita, S., Uchida, H., Watakabe, Y., Naitou, K., Yanai, R., Sahara, N., Takagi, S., Katayama, R., Iwata, Y., Shiokawa, T., Hayakawa, Y., Otsuka, K., Watanabe-Takano, H., Haneda, Y., Fukuhara, S., Fujiwara, M., Nii, T., Meno, C., Takeshita, N., Yashiro, K., Rosales Rocabado, J. M., Kaku, M., Yamada, T., Oishi, Y., Koike, H., Cheng, Y., Sekine, K., Koga, J.-i., Sugiyama, K., Kimura, K., Karube, F., Kim, H., Manabe, I., Nemoto, T., Tainaka, K., Hamada, A., Brismar, H., and Susaki, E. A. (2024). descSPIM: An affordable and easy-to-build light-sheet microscope optimized for tissue clearing techniques. Nature Communications, 15(1):4941.

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Palmeira, M. A. (2023). Implementation of a Customised Light-Sheet Microscope. M.Eng., Universidade de Coimbra (Portugal).

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Richardson, D. S. and Lichtman, J. W. (2015). Clarifying Tissue Clearing. Cell, 162(2):246–257.

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Tainaka, K., Kuno, A., Kubota, S. I., Murakami, T., and Ueda, H. R. (2016). Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling. Annual Review of Cell and Developmental Biology, 32(Volume 32, 2016):713–741.

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Toader, B., Boulanger, J., Korolev, Y., Lenz, M. O., Manton, J., Schönlieb, C.-B., and Mureşan, L. (2022). Image Reconstruction in Light-Sheet Microscopy: Spatially Varying Deconvolution and Mixed Noise. Journal of Mathematical Imaging and Vision, 64(9):968–992.

Vos, B. E., Blesa, E. B., and Betz, T. (2021). Designing a High-Resolution, LEGO-Based Microscope for an Educational Setting. The Biophysicist, 2(3):29–40.

Wan, Y., McDole, K., and Keller, P. J. (2019). Light-Sheet Microscopy and Its Potential for Understanding Developmental Processes. Annual Review of Cell and Developmental Biology, 35(Volume 35, 2019):655–681.

Weber, M. and Huisken, J. (2011). Light sheet microscopy for real-time developmental biology. Current Opinion in Genetics & Development, 21(5):566–572.
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dc.identifier.urihttp://tdr.lib.ntu.edu.tw/jspui/handle/123456789/104773-
dc.description.abstract商用層光顯微鏡因硬體造價與光學對齊門檻,限制了其於一般生物實驗室與教育環境之普及。本研究以開源 LEMOLish 架構為基礎,開發一套低成本、模組化且具自動化掃描功能之桌面型層光顯微成像平台。系統保留樂高積木結構框架,並導入 3D 列印固定式狹縫、實心玻璃柱、對稱式雙向照明、樹莓派相機模組、EV3 馬達控制及網頁操作介面,以改善光學整形穩定性、樣本照明均勻性與影像擷取效率。

實驗結果顯示,改良型狹縫可降低局部異常高亮與不規則灰階變化。雙向照明則可補償單側照明造成的方向性亮度衰減與遮蔽。以自製斜邊靶標量測所得之感測器平面 MTF50、MTF20 與 MTF10 分別為 102 lp/mm、225 lp/mm 與 324 lp/mm,換算至樣本平面後,其等效半週期尺寸約為 98.39 μm、44.58 μm 與 30.92 μm。影像預處理後,各組影像之 CNR 均明顯提升,CII 都大於 1,顯示其對比提升。兩次重複掃描體數據於 z、y、x 方向的相對位移約為 50 μm、81 μm 與 0 μm,配準後峰值相關係數為 0.7193。三維重建結果可呈現透明化魷魚樣本之整體輪廓、眼球外廓與腕足等大尺度組織結構。Image Decorrelation Analysis 所得 XY 截面面內有效解析度約為 50 μm,但不代表整體三維解析度。

本平台硬體建置成本約為 2,760 美元,驗證了以樂高積木、3D 列印元件、消費級相機與開源控制程式建構公分級透明樣本三維成像系統之可行性。此系統雖仍受限於層光厚度、Z 軸取樣及細節辨識能力,但可作為低成本三維生物成像與跨領域 STEM 教育之實作平台。
zh_TW
dc.description.abstractCommercial light-sheet microscopes (LSMs) are often constrained by high hardware costs and complex optical alignment procedures, which limits their widespread adoption in general biological laboratories and educational environments. To overcome these physical and financial barriers, this study developed a modular, desktop-class LSM platform based on the open-source LEMOLish architecture. While retaining the LEGO-based structural framework, the platform incorporates 3D-printed fixed slits, solid glass cylinder lenses, symmetrical dual-sided illumination, a Raspberry Pi camera module, EV3 motor control, and a web-based user interface to enhance optical beam-shaping stability, illumination uniformity, and image acquisition efficiency.

Experimental results demonstrate that the modified slits effectively eliminate localized intensity hotspots and irregular grayscale variations. Furthermore, symmetrical dual-sided illumination compensates for directional attenuation and shadowing artifacts inherent in single-sided illumination. Using a custom slanted-edge target, sensor-plane MTF50, MTF20, and MTF10 were measured at 102 lp/mm, 225 lp/mm, and 324 lp/mm, corresponding to equivalent sample-plane half-period resolution limits of approximately 98.39 µm, 44.58 µm, and 30.92 µm, respectively. Following image preprocessing, the Contrast-to-Noise Ratio (CNR) was significantly improved across all datasets, with a Contrast Improvement Index (CII) consistently exceeding 1.0. Volumetric repeatability tests revealed relative displacements of approximately 50 µm, 81 µm, and 0 µm along the Z-, Y -, and X-axes between repeat scans, yielding a post-registration peak correlation coefficient of 0.7193. Three-dimensional reconstructions clearly resolved macro-structural features of optically cleared squid specimens, including overall morphology, eye contours, and arms. Image Decorrelation Analysis indicated an in-plane (XY) effective resolution of approximately 50 µm.

Constructed at a hardware cost of approximately $2,760 USD, this platform validates the feasibility of building a 3D imaging system for centimeter-scale cleared specimens using LEGO bricks, 3D-printed components, consumer-grade cameras, and open-source control software. Despite current constraints in light-sheet thickness, Z-axis sampling, and fine feature resolution, the proposed system serves as a cost-effective practical platform for 3D biological imaging and interdisciplinary STEM education.
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dc.description.tableofcontents口試委員審定書 i
致謝 iii
摘要 v
Abstract vii
目次 ix
圖次 xiii
表次 xv

第一章 緒論 1
1.1 研究背景 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
1.2 研究目的 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2

第二章 文獻探討 5
2.1 層光顯微技術之發展與現狀 . . . . . . . . . . . . . . . . . . . . . . 5
2.2 層光顯微影像之三維重建與處理技術 . . . . . . . . . . . . . . . . . 8
2.3 低成本與開源硬體顯微鏡之發展 . . . . . . . . . . . . . . . . . . . . 11
2.4 樂高積木於光學與科學儀器之應用 . . . . . . . . . . . . . . . . . . 16

第三章 研究方法 21
3.1 系統基準分析與設計策略 . . . . . . . . . . . . . . . . . . . . . . . . 22
3.1.1 原始 LEMOLish 系統的限制分析 . . . . . . . . . . . . . . . . . . 22
3.1.2 實驗樣本特徵與成像需求 . . . . . . . . . . . . . . . . . . . . . . 23
3.1.3 本研究之優化策略與總體設計 . . . . . . . . . . . . . . . . . . . 25
3.1.4 系統建置成本分析 . . . . . . . . . . . . . . . . . . . . . . . . . . 29
3.2 硬體結構與光路系統優化 . . . . . . . . . . . . . . . . . . . . . . . . 30
3.2.1 結構穩定性優化與震動抑制 . . . . . . . . . . . . . . . . . . . . 30
3.2.2 對稱式雙向照明光路設計 . . . . . . . . . . . . . . . . . . . . . . 32
3.2.3 整合式成像模組與光學參數校準 . . . . . . . . . . . . . . . . . . 35
3.3 軟韌體整合與遠端自動化控制 . . . . . . . . . . . . . . . . . . . . . 37
3.3.1 基於 Linux 之控制架構與通訊協定 . . . . . . . . . . . . . . . . . 37
3.3.2 遠端網頁控制介面開發 . . . . . . . . . . . . . . . . . . . . . . . 39
3.4 影像處理與資料可視化流程 . . . . . . . . . . . . . . . . . . . . . . 42
3.4.1 二維影像預處理流程 . . . . . . . . . . . . . . . . . . . . . . . . 42
3.4.2 空間堆疊與深度著色算法實現 . . . . . . . . . . . . . . . . . . . 43
3.4.3 三維體渲染與視覺化呈現 . . . . . . . . . . . . . . . . . . . . . . 44
3.5 影像品質評估指標與分析方法 . . . . . . . . . . . . . . . . . . . . . 45
3.5.1 影像灰階分布與清晰度評估指標 . . . . . . . . . . . . . . . . . . 46
3.5.2 空間解析度與調製轉換函數分析 . . . . . . . . . . . . . . . . . . 48
3.5.3 成像品質與辨識度指標 . . . . . . . . . . . . . . . . . . . . . . . 50
3.5.4 三維相位互相關與掃描重複性分析 . . . . . . . . . . . . . . . . 51
3.5.5 三維重建解析度評估 . . . . . . . . . . . . . . . . . . . . . . . . 52
3.5.6 數據獲取與統計分析實作 . . . . . . . . . . . . . . . . . . . . . . 53
3.6 實驗設計與成像流程 . . . . . . . . . . . . . . . . . . . . . . . . . . 53
3.6.1 不同狹縫模組之比較 . . . . . . . . . . . . . . . . . . . . . . . . 54
3.6.2 不同照明方向之比較 . . . . . . . . . . . . . . . . . . . . . . . . 55
3.6.3 調制轉換函數測試 . . . . . . . . . . . . . . . . . . . . . . . . . . 57
3.6.4 影像預處理之評估 . . . . . . . . . . . . . . . . . . . . . . . . . . 58
3.6.5 自動化掃描與重複定位測試 . . . . . . . . . . . . . . . . . . . . 59
3.6.6 三維重建與有效解析度分析 . . . . . . . . . . . . . . . . . . . . 60

第四章 結果與討論 61
4.1 結構剛性與整形元件效能驗證 . . . . . . . . . . . . . . . . . . . . . 62
4.2 雙向照明之遮蔽效應修正評估 . . . . . . . . . . . . . . . . . . . . . 67
4.3 系統空間頻率響應與應用界定 . . . . . . . . . . . . . . . . . . . . . 71
4.4 影像預處理與特徵辨識度改善分析 . . . . . . . . . . . . . . . . . . 74
4.5 自動化控制步進定位穩定性驗證 . . . . . . . . . . . . . . . . . . . . 77
4.6 三維重建成果與面內有效解析度評估 . . . . . . . . . . . . . . . . . 79

第五章 結論與未來展望 85
5.1 研究總結 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 85
5.2 未來展望與系統限制 . . . . . . . . . . . . . . . . . . . . . . . . . . 86

參考文獻 87

附錄 A — 本研究使用程式碼清單 93
A.1 從屬端 (EV3) 運動控制與通訊伺服器腳本 . . . . . . . . . . . . . . . 93
A.2 主控端 (Raspberry Pi) 影像擷取與 web 介面腳本 . . . . . . . . . . . 94
A.3 影像預處理腳本 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 96
A.4 三維空間堆疊與深度著色演算法實作 . . . . . . . . . . . . . . . . . 97
A.4.1 灰階空間堆疊實作 . . . . . . . . . . . . . . . . . . . . . . . . . . 97
A.4.2 深度著色與色彩空間映射實作 . . . . . . . . . . . . . . . . . . . 97
A.5 三維互相關演算法 . . . . . . . . . . . . . . . . . . . . . . . . . . . . 99
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dc.language.isozh_TW-
dc.subject層光顯微鏡-
dc.subject樂高積木架構-
dc.subject模組化桌上型顯微鏡-
dc.subject低成本設備-
dc.subject三維重建-
dc.subject網頁端使用者介面-
dc.subjectLight-sheet microscopy-
dc.subjectLEGO-based architecture-
dc.subjectModular desktop-class microscopy-
dc.subjectAffordable instrumentation-
dc.subject3D Reconstruction-
dc.subjectWeb-based GUI-
dc.title以樂高積木構建之低成本層光顯微鏡開發與其於三維生物影像化之應用zh_TW
dc.titleDevelopment of a Cost-Efficient LEGO-Based Light-Sheet Microscope for Three-Dimensional Biological Imagingen
dc.typeThesis-
dc.date.schoolyear114-2-
dc.description.degree碩士-
dc.contributor.oralexamcommittee董奕鍾;陳壁彰;盧彥文zh_TW
dc.contributor.oralexamcommitteeYi-Chung Tung;Bi-Chang Chen;Yen-Wen Luen
dc.subject.keyword層光顯微鏡; 樂高積木架構; 模組化桌上型顯微鏡; 低成本設備; 三維重建; 網頁端使用者介面zh_TW
dc.subject.keywordLight-sheet microscopy; LEGO-based architecture; Modular desktop-class microscopy; Affordable instrumentation; 3D Reconstruction; Web-based GUIen
dc.relation.page99-
dc.identifier.doi10.6342/NTU202602176-
dc.rights.note同意授權(限校園內公開)-
dc.date.accepted2026-08-14-
dc.contributor.author-college生物資源暨農學院-
dc.contributor.author-dept生物機電工程學系-
dc.date.embargo-lift2031-08-01-
顯示於系所單位:生物機電工程學系

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